View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1041_high_2 (Length: 561)

Name: NF1041_high_2
Description: NF1041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1041_high_2
NF1041_high_2
[»] chr5 (3 HSPs)
chr5 (30-552)||(38605235-38605764)
chr5 (30-119)||(40181191-40181283)
chr5 (449-482)||(40180851-40180884)
[»] chr8 (10 HSPs)
chr8 (334-494)||(44459952-44460121)
chr8 (334-494)||(44467485-44467654)
chr8 (334-494)||(34502528-34502698)
chr8 (350-495)||(44459275-44459420)
chr8 (350-495)||(44466808-44466953)
chr8 (30-107)||(44459639-44459716)
chr8 (30-107)||(44467172-44467249)
chr8 (46-119)||(44460357-44460430)
chr8 (46-119)||(44467890-44467963)
chr8 (36-119)||(34502246-34502329)
[»] chr1 (2 HSPs)
chr1 (325-495)||(46358821-46358991)
chr1 (46-119)||(46359227-46359300)
[»] chr6 (1 HSPs)
chr6 (455-495)||(410692-410732)


Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 30 - 552
Target Start/End: Complemental strand, 38605764 - 38605235
Alignment:
Q  30 atattactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgctgctgc---ac 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  38605764 atattactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgctgctgctgcac 38605665  T
Q  127 tccaaagatgataatcttcactcttcttctcaaggttacacttacacttaccttcctccttgtccagatgatgtcactgcatctgaagatttccggatag 226  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38605664 tccaaagatgataatcgtcactcttcttctcaaggctacacttacacttaccttcctccttgtccagacgatgtcactgcatctgaagatttccggatag 38605565  T
Q  227 taatgacatttcttagtggtactcctcctcctctccgtaattattattacaaatttaatagatggttcagtttcacatgcttggaacctctg-------c 319  Q
    | ||||||||||||||||||||||||   ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||       |    
T  38605564 tgatgacatttcttagtggtactcct---cctctccataattataattacaaatttaatagatgtttcagtttcacatgcttggaaactctgcatcagcc 38605468  T
Q  320 atcagcatcaaccacattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38605467 atcagcatcaaccacattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcatattcttattcactt 38605368  T
Q  420 tatcaagtgggcttttaggagtaattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatgcgatgttccaactaaatttgatgtt 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38605367 tatcaagtgggcttttaggagtaattcacatctcatcactacccctgttttggaatctcttgtttcagcaatatgcgatgttccaactaaatttgatgtt 38605268  T
Q  520 gaactaaggcagaatgacatactttttctgtgg 552  Q
    |||||||||||||||||||||||||||||||||    
T  38605267 gaactaaggcagaatgacatactttttctgtgg 38605235  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 40181283 - 40181191
Alignment:
Q  30 atattactttacacttcaagctcttttgac---cacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 119  Q
    |||||||| |||||| |||||||||||||    ||||| ||||||||||||||| |||||||||||    ||||||| |||||| ||||||||    
T  40181283 atattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaagcagagtctatctatcaaaagttgctgct 40181191  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 40180884 - 40180851
Alignment:
Q  449 atctcatcactacccctgttttggaatcccttgt 482  Q
    |||||||||||||||||||| |||||||||||||    
T  40180884 atctcatcactacccctgttctggaatcccttgt 40180851  T

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Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 334 - 494
Target Start/End: Original strand, 44459952 - 44460121
Alignment:
Q  334 cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctt 433  Q
    |||||| |||||||| |||||||||||||||  ||||||| |  | ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  44459952 cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt 44460051  T
Q  434 ---ttaggag------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg 494  Q
       | |||||      | ||  | |||||||||||||||||||| |||||||||||||||||| ||||||    
T  44460052 ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatg 44460121  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 334 - 494
Target Start/End: Original strand, 44467485 - 44467654
Alignment:
Q  334 cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctt 433  Q
    |||||| |||||||| |||||||||||||||  ||||||| |  | ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  44467485 cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt 44467584  T
Q  434 ---ttaggag------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg 494  Q
       | |||||      | ||  | |||||||||||||||||||| |||||||||||||||||| ||||||    
T  44467585 ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatg 44467654  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 494
Target Start/End: Complemental strand, 34502698 - 34502528
Alignment:
Q  334 cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcac-tttatcaagtgggct 432  Q
    |||||| |||||||| |||||||| |||| | |||||||| |  |  |||||||||||||||||| |||||||||||||| ||| ||||| |||||||||    
T  34502698 cattttgtactcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttatccacttttatgaagtgggct 34502599  T
Q  433 tttaggag---------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg 494  Q
    |  |||||         | ||  ||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  34502598 tggaggaggaggaacacttataaacatctcattactacccttgttctggaatcccttgtttcagcaatatg 34502528  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 495
Target Start/End: Original strand, 44459275 - 44459420
Alignment:
Q  350 ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca 449  Q
    ||||||||||||| |||||||||| |   |||||| |||||||||||   ||||||||||||||  ||||||| |||| || ||  | || |||     |    
T  44459275 ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga 44459374  T
Q  450 tctcatcactacccctgttttggaatcccttgtttcagcaatatgc 495  Q
     |||||||||||||||||| ||||||||||||||||| ||||||||    
T  44459375 cctcatcactacccctgttctggaatcccttgtttcatcaatatgc 44459420  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 495
Target Start/End: Original strand, 44466808 - 44466953
Alignment:
Q  350 ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca 449  Q
    ||||||||||||| |||||||||| |   |||||| |||||||||||   ||||||||||||||  ||||||| |||| || ||  | || |||     |    
T  44466808 ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga 44466907  T
Q  450 tctcatcactacccctgttttggaatcccttgtttcagcaatatgc 495  Q
     |||||||||||||||||| ||||||||||||||||| ||||||||    
T  44466908 cctcatcactacccctgttctggaatcccttgtttcatcaatatgc 44466953  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 44459639 - 44459716
Alignment:
Q  30 atattactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtca 107  Q
    |||||||||||| || ||||||||||||||||| || |||||| || |||| ||||| |||||  |||||||||||||    
T  44459639 atattactttactctgcaagctcttttgaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtca 44459716  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 44467172 - 44467249
Alignment:
Q  30 atattactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtca 107  Q
    |||||||||||| || ||||||||||||||||| || |||||| || |||| ||||| |||||  |||||||||||||    
T  44467172 atattactttactctgcaagctcttttgaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtca 44467249  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 44460357 - 44460430
Alignment:
Q  46 caagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 119  Q
    |||||| |||||||||||| |||||   ||||||| |||||||||||| ||||||| ||||||||  |||||||    
T  44460357 caagcttttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44460430  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 44467890 - 44467963
Alignment:
Q  46 caagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 119  Q
    |||||| |||||||||||| |||||   ||||||| |||||||||||| ||||||| ||||||||  |||||||    
T  44467890 caagcttttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44467963  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 34502329 - 34502246
Alignment:
Q  36 ctttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 119  Q
    |||||||||  |||||||||||| |||||  ||||   ||||||| | |||||||||| ||||||||||||||||  |||||||    
T  34502329 ctttacactgaaagctcttttgatcacaagatgtatcactgatatgacccaccaagccgcttctatctgtcaaaagatgctgct 34502246  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 495
Target Start/End: Original strand, 46358821 - 46358991
Alignment:
Q  325 catcaaccacattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatca 424  Q
    ||||||| ||| |||  ||| ||| ||||||||||||| |||||||||| |   |||||| |||||||||||   ||||||||||||||  ||||||| |    
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  425 agtgggcttttaggagtaattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatgc 495  Q
    ||| || ||  | || |||     | |||||||||||||||||| |||||||||||||||||| |||||||    
T  46358921 agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcagaaatatgc 46358991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 46359227 - 46359300
Alignment:
Q  46 caagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 119  Q
    |||||| |||||||||||| |||||   ||||||| |||||||||||| ||||||| ||||||||  |||||||    
T  46359227 caagcttttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 46359300  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 495
Target Start/End: Original strand, 410692 - 410732
Alignment:
Q  455 tcactacccctgttttggaatcccttgtttcagcaatatgc 495  Q
    |||||||||||||| |||| |||||| ||||||||||||||    
T  410692 tcactacccctgttctggagtcccttatttcagcaatatgc 410732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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