View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1041_low_1 (Length: 675)
Name: NF1041_low_1
Description: NF1041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1041_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 29 - 668
Target Start/End: Complemental strand, 30708884 - 30708244
Alignment:
| Q |
29 |
aatcctcttcgacaaacagttgttttgtcacagtaaaatctttgttcttagattaacctaaaggtttacagaatggttttagccgttggagttgttgcgg |
128 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30708884 |
aatcctcttcgacaaacagttgttttgtcac-gtaaaatcttagttcttagattaacctaaaggtttacagaatggttttagccgttggagttgttgcgg |
30708786 |
T |
|
| Q |
129 |
atggagaggtcaataggatccaatttatggagggatgaggtcatatagaattcaatttcttgaactatgatcact--ctgtttttaagaattaccggggt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
30708785 |
atggagaggtcaataggatccaatttatggagggatgaggtcatatagaattcaatttcttgaactatgatcactttctgtttttaagaattactggggt |
30708686 |
T |
|
| Q |
227 |
tgttcaattaaaatgggtatgtgttattgttgattcattcattaacaatttaatgggtttgtgcagatcaagcagatttgctagattgcagagccttcag |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30708685 |
tgttcaattaaaatgggtatgtgttattgttgattcattcattaacaatttaatgggtttgtgcagatcaagcagatttgctagattgcagagccttcag |
30708586 |
T |
|
| Q |
327 |
ccgacaattgctggcaagaatttgtacattcgtttccgttgcagtactggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttg |
426 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30708585 |
ccgacaattgctggcaagaatttgtacattcgtttccgttgtagtactggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttg |
30708486 |
T |
|
| Q |
427 |
attttcttcagagtgactttcctgacatggatgtcattggaatctcaggtaaatcatgagcttgtttgtataattttttcttcataccattaatcctaaa |
526 |
Q |
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| T |
30708485 |
attttcttcagagtgactttcctgacatggatgtcattggaatctcaggtaaatcatgagcttgtttgtataattttttcttcataccattaatcctaaa |
30708386 |
T |
|
| Q |
527 |
actgttccttgttatggttgaattgaaaatagttgctaatgttttcatccacactgttggtttggttatggcaggaaatttctgttccgacaagaaagcg |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30708385 |
actgttccttgttatggttgaattgaaaatagttgctaatgttttcatgcacactgttggtttggttatggcaggaaatttctgttccgacaagaaagcg |
30708286 |
T |
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| Q |
627 |
gcggctgtaaactggattgaagggcgtggtaagtctgtggtg |
668 |
Q |
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| T |
30708285 |
gcggctgtaaactggattgaagggcgtggtaagtctgtggtg |
30708244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 375 - 466
Target Start/End: Original strand, 39676734 - 39676825
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
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|||||||| ||||||||||||||||| ||||||||||| ||||| || |||||||||||||| | ||| |||||||| |||||||| ||||| |
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| T |
39676734 |
ggtgatgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgattttcttcaaactgattttcctgatatggatgttattgg |
39676825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 10046836 - 10046938
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattggaatctcag |
474 |
Q |
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|||||||| ||||| ||||||||||| ||||||||||| ||||| || |||||||||||||| || || |||||||| |||||||| ||||| || |||| |
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| T |
10046836 |
ggtgatgcaatgggaatgaacatggtatcaaaaggtgtacaaaacgtacttgattttcttcaaagcgattttcctgatatggatgttattggtatatcag |
10046935 |
T |
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| Q |
475 |
gta |
477 |
Q |
| |
|
||| |
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| T |
10046936 |
gta |
10046938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 478
Target Start/End: Original strand, 37949450 - 37949559
Alignment:
| Q |
369 |
agtactggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattggaa |
468 |
Q |
| |
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||||| |||||||||||||||||||||||||| || ||||| || || || || |||||||| |||| | ||| || |||||||||||||| ||||| | |
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| T |
37949450 |
agtacgggtgatgccatggggatgaacatggtctccaaaggggtgcagaacgttcttgatttccttcgaaatgatttccctgacatggatgttattggca |
37949549 |
T |
|
| Q |
469 |
tctcaggtaa |
478 |
Q |
| |
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| |||||||| |
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| T |
37949550 |
tatcaggtaa |
37949559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Original strand, 10867191 - 10867282
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
| |
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|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
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| T |
10867191 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
10867282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 10873121 - 10873030
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
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|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
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| T |
10873121 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
10873030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 10878192 - 10878101
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
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| T |
10878192 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
10878101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 10883263 - 10883172
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
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| T |
10883263 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
10883172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Complemental strand, 10887178 - 10887087
Alignment:
| Q |
375 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
466 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
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| T |
10887178 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
10887087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 650
Target Start/End: Complemental strand, 10873022 - 10872972
Alignment:
| Q |
600 |
ggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaaggg |
650 |
Q |
| |
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|||||||| ||||| ||||||||||| ||||| || ||||||||||||||| |
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| T |
10873022 |
ggaaatttttgttcggacaagaaagctgcggcagtgaactggattgaaggg |
10872972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 650
Target Start/End: Complemental strand, 10878093 - 10878043
Alignment:
| Q |
600 |
ggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaaggg |
650 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||| || ||||||||||||||| |
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|
| T |
10878093 |
ggaaatttttgttcggacaagaaagctgcggcagtgaactggattgaaggg |
10878043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 650
Target Start/End: Complemental strand, 10883164 - 10883114
Alignment:
| Q |
600 |
ggaaatttctgttccgacaagaaagcggcggctgtaaactggattgaaggg |
650 |
Q |
| |
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|||||||| ||||| ||||||||||| ||||| || ||||||||||||||| |
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| T |
10883164 |
ggaaatttttgttcggacaagaaagctgcggcagtgaactggattgaaggg |
10883114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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