View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1041_low_12 (Length: 209)
Name: NF1041_low_12
Description: NF1041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1041_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 19315181 - 19315020
Alignment:
| Q |
23 |
tgaagaaatcacaaagagagaga--ttatatagaaatgcaacctgcagaccatgtggtcgcagcccatagatctagcaacataaattctgcatttgggac |
120 |
Q |
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| T |
19315181 |
tgaagaaatcacaaagagagagagattatatagaaatgcaacctgcagaccatgtggtcgcagcccatagatctagcaacataaattctgcatttgggac |
19315082 |
T |
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| Q |
121 |
atctcatccatttcttctttttagctaggcgcatcaacatgacaacctctttcttcatctca |
182 |
Q |
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| T |
19315081 |
atctcatccatttcttctttttagctaggcgcatcaacatgacatcctctttcttcgtctca |
19315020 |
T |
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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 19270818 - 19270733
Alignment:
| Q |
96 |
gcaacataaattctgcatttgggacatctcatccatttcttctttttagctaggcgcatcaacatgacaacctctttcttcatctc |
181 |
Q |
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|||||||||||||||||||| ||||||| | |||| ||||| | ||||| |||||||||||||| ||| | ||||||||| |||| |
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| T |
19270818 |
gcaacataaattctgcatttaggacatcgcctccacttcttatccttagcaaggcgcatcaacataacatcttctttcttcctctc |
19270733 |
T |
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