View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1041_low_3 (Length: 552)
Name: NF1041_low_3
Description: NF1041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1041_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 31 - 543
Target Start/End: Original strand, 33153193 - 33153705
Alignment:
| Q |
31 |
cttataacgtggccaacaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactc |
130 |
Q |
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| T |
33153193 |
cttataacgtggccaacaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactc |
33153292 |
T |
|
| Q |
131 |
cattgaaataaaggttctcttttcttattcatatatgttttatgaaacaatctatcttcatgcaccatcgtgttagttataaacaagttgaatttggaac |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33153293 |
cattgaaataaaggttctcttttcttattcatatatgttttatgaaacaatctatcttcatgcaccatcatgttagttataaacaagttgaatttggaac |
33153392 |
T |
|
| Q |
231 |
cagggtaacacaagagaagaaatagctagtttgggaactgttctacggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaag |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33153393 |
cagggtaacacaagagaagaaatagctagtttgggaactgttctacggtgcatttcagattacaatattgaacgtgcggatttacttaacgagatccaag |
33153492 |
T |
|
| Q |
331 |
gtagaattcttgagctgaagagagaaaggcaagtagcttcttgtattggaatttcgcaaatgaattaacaggattctgcataagttttggtggcactttg |
430 |
Q |
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|||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33153493 |
gtagaattattgatctgaagagaaaaaggcaagtagcttcttgtattggaatttcgcaaatgaattaacaggattctgcataagttttggtggcactttg |
33153592 |
T |
|
| Q |
431 |
ggtttcagttcttggatgtaggtaatttgatagtattttttggttttgggctggttaagaaaatgtttatcaaatgtatcatcatgttaacatgtatgtt |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33153593 |
ggtttcagttcttggatgtaggtaatttgatagtattttttgtttttgggctggttaagaaaatgtttatcaaatgtatcatcatgttaacatgtatgtt |
33153692 |
T |
|
| Q |
531 |
tatcaattcatct |
543 |
Q |
| |
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||||||||||||| |
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| T |
33153693 |
tatcaattcatct |
33153705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 48 - 381
Target Start/End: Original strand, 2363640 - 2363978
Alignment:
| Q |
48 |
aagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttc |
147 |
Q |
| |
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|||||||||||||||| ||| |||| |||||||||||||| ||||| | || | ||||||||| |||||| ||||||||||||| ||||| ||||||| |
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| T |
2363640 |
aagaatcaatcagttggtctattgcgggaacatgtgcagaatgcaagatcgattaatgagagcagttgcaaggcaaccaactccatagaaatcaaggttc |
2363739 |
T |
|
| Q |
148 |
tcttttcttattcata-tatgttttatgaaacaatctatcttcatgcaccatcgtgttagttataaacaagttgaatttggaaccagggtaacacaagag |
246 |
Q |
| |
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| ||| |||||||| | ||| |||||||||||| || ||||||||||||| ||| | ||||||| | || |||||| || |||| ||| ||| || |
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|
| T |
2363740 |
tttttacttattcaaattatattttatgaaacattccatcttcatgcacctggatgtaatttataaatattttcaatttgaaatcaggataaggcaaaag |
2363839 |
T |
|
| Q |
247 |
---aagaaatagctagtttgggaactgttctacggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaaggtagaattcttga |
343 |
Q |
| |
|
||||||| |||||| ||||||||||||||| |||| |||||||| ||||||| |||| | ||||||||| |||||||| || |||||||||| ||| |
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| T |
2363840 |
accaagaaattgctagtctgggaactgttctacagtgcctttcagataacaatatggaatccgtggatttactgaacgagattcacggtagaattcatga |
2363939 |
T |
|
| Q |
344 |
gctga--agagagaaaggcaagtagcttcttgtattggaa |
381 |
Q |
| |
|
||| | ||||||||||| |||||||| ||||||||||| |
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|
| T |
2363940 |
gctaaatagagagaaaggtgagtagctt-ttgtattggaa |
2363978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 39425244 - 39425098
Alignment:
| Q |
44 |
caacaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaag |
143 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||||||||| ||||||| ||| || |||||| | |||| || |||||||||||| ||||| ||| |
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| T |
39425244 |
caacaataatcaattagttgatctcttgcgagaacatgtgcagaatgcaaaactgatttctgagagtacttgcatgaaaaccaactccatcgaaattaag |
39425145 |
T |
|
| Q |
144 |
gttc-tcttttcttattcatatatgttttatgaaacaatctatcttca |
190 |
Q |
| |
|
|||| | |||||||||||| || | |||||||||||| || ||||||| |
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|
| T |
39425144 |
gttctttttttcttattca-atttattttatgaaacattccatcttca |
39425098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 39372284 - 39372396
Alignment:
| Q |
33 |
tataacgtggccaacaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactcca |
132 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||||| ||||| || |||| ||| ||| ||| || |||| ||| ||||||| ||||||||||| |
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|
| T |
39372284 |
tataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagggcagttgcaagaaaaccaactcca |
39372383 |
T |
|
| Q |
133 |
ttgaaataaaggt |
145 |
Q |
| |
|
||||||| ||||| |
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|
| T |
39372384 |
ttgaaatcaaggt |
39372396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 39224812 - 39224914
Alignment:
| Q |
46 |
acaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggt |
145 |
Q |
| |
|
||||| |||||| ||||||| | ||||| |||||||| |||| ||| ||| | | || |||||||| ||||||| |||||||||||||||||| ||||| |
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|
| T |
39224812 |
acaaggatcaattagttgatatgttgcaagaacatgtccagaatgccaaacttatttgtgagagcagttgcaagaaaaccaactccattgaaatcaaggt |
39224911 |
T |
|
| Q |
146 |
tct |
148 |
Q |
| |
|
||| |
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|
| T |
39224912 |
tct |
39224914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 39493029 - 39492916
Alignment:
| Q |
46 |
acaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggt |
145 |
Q |
| |
|
|||| |||||| |||||||||||| | ||||||||||||| | |||| | | || |||||||| |||||| |||||||||||||||||| ||||| |
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|
| T |
39493029 |
acaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaactaatttctgagagcatttgcaaggaaaccaactccattgaaattaaggt |
39492930 |
T |
|
| Q |
146 |
tctcttttcttattc |
160 |
Q |
| |
|
| | ||||||||||| |
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|
| T |
39492929 |
t-ttttttcttattc |
39492916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 394 - 527
Target Start/End: Original strand, 25081080 - 25081213
Alignment:
| Q |
394 |
attaacaggattctgcataagttttggtggcactttgggtttcagttcttggatgtaggtaatttgatagtattttttggttttgggctggttaagaaaa |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
25081080 |
attaacaggattctgcataagttttggtggcacttcgggtttcagttctaggatgttggtaatttgatagtattttt-ggttttgggctggttaagaaat |
25081178 |
T |
|
| Q |
494 |
tgtttatcaa-atgtatcatcatgttaacatgtat |
527 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |
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|
| T |
25081179 |
tgtttatatctatgtattatcatgttaacatgtat |
25081213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 51576982 - 51577103
Alignment:
| Q |
43 |
ccaacaagaatcaatca---gttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaat |
139 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| ||||||| | |||||||||| || ||||||||| ||||||| |||||||||||||||||| |
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|
| T |
51576982 |
ccaacaagaatcaatcatccgttgatctcttgtgggaacttgtgcagtgggcaaaagtgatttctgagagcaactgcaagaaaaccaactccattgaaat |
51577081 |
T |
|
| Q |
140 |
aaaggttctcttttcttattca |
161 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
51577082 |
caaggttcgtatttcttattca |
51577103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 51577214 - 51577283
Alignment:
| Q |
277 |
ggtgcatttcagattacaatattgaatgtgcggatttacttaacgagatccaaggtagaattcttgagct |
346 |
Q |
| |
|
||||| |||| ||| ||||||| |||| || |||||||||| || |||| |||||||||||||||||||| |
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|
| T |
51577214 |
ggtgcgtttcggataacaatatagaatatgtggatttacttgaccagattcaaggtagaattcttgagct |
51577283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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