View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1041_low_4 (Length: 444)
Name: NF1041_low_4
Description: NF1041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1041_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 284
Target Start/End: Complemental strand, 40618009 - 40617729
Alignment:
| Q |
8 |
ccaataatatattatagtttagaatgaattaagtatgattaaaagactcgcaaaaactagtcaaaacttgcaatttgttccaattttcaaaattagatgc |
107 |
Q |
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| T |
40618009 |
ccaaaaatatcttatagtttagaatgaattaagtataattaaaagactcgcaaaaactagtcaaaacttgctatttgttccaattttcaaaattagatgc |
40617910 |
T |
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| Q |
108 |
tcaatttgtattct-agttaggtataataa---ctccatggtgggtacaatacaacatttgggactctatatatatggacatgcaattgccctatatatg |
203 |
Q |
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| T |
40617909 |
tcaatttgtattctgatttaggtataataataactccatggtgggtacaatacaacatttgggactctatatatatggacatgcaattgccctatatatg |
40617810 |
T |
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| Q |
204 |
ccaaagtaacacttgaagctcgagcacacaaaatctactcactctctattctaatctcaatggctcagatatcaaatcttg |
284 |
Q |
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| T |
40617809 |
ccaaagtaacacttgaagctcaagcacacaaaaactactcactctctattctaatctcaatggctcagatatcaaatcttg |
40617729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 40617702 - 40617665
Alignment:
| Q |
311 |
aacatcataaacggtccattcctcacggatgctatttc |
348 |
Q |
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| T |
40617702 |
aacatcataaacggtccattcctcacggatgctatttc |
40617665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 40628503 - 40628426
Alignment:
| Q |
79 |
aatttgttccaattttcaaaattagatgctcaattt-gtattctagttaggtataataactccatggtgggtacaata |
155 |
Q |
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| T |
40628503 |
aatttgttccaattttcaacataggaggctgaattttgttttttagttaggtgtaataactccttgatgggtacaata |
40628426 |
T |
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