View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1041_low_9 (Length: 249)
Name: NF1041_low_9
Description: NF1041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1041_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 292756 - 292510
Alignment:
| Q |
1 |
aatcagccttctctcatgatttcattctgcaagtaaaacttcccttc---aatattcttgnnnnnnnnnnnnn--atgtatattgtattttggattatta |
95 |
Q |
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| T |
292756 |
aatcagccttctctcatgatttcattctgcaagtaaaactgcccttcttcaaaattcttgttttttttgttttttatgtatattgtattttggattatta |
292657 |
T |
|
| Q |
96 |
tgaaatcaacaagaacaagaacaactatagagatacaaagcatcaaaatttatttgagactcaatagtcacacatttagtttctataatatagcaataac |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
292656 |
tgaaatcaacaagaacaagaacaactatagagatacaaagcatcaaaatttatttgagactcaatagtcacacatttagtttctataatatagcaataac |
292557 |
T |
|
| Q |
196 |
atgtttaggatagtctttgcacgatgattggactcttcactctgtgg |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
292556 |
atgtttaggatagtctttgcacgatgattggactcttcactctgtgg |
292510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 9507509 - 9507338
Alignment:
| Q |
71 |
atgtatattgtattttggattattatgaaatcaacaagaacaagaacaactatagagatacaaagcatcaaaatttatttgagactcaatagtcacacat |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||||||| |||| |
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| T |
9507509 |
atgtatattgtattttggattattatgaaatcaacaagaacatgaacaactatagagatacaaagcatcataattatttggagactcaatagtcatacat |
9507410 |
T |
|
| Q |
171 |
ttagtttctataatatagcaataacatgtttaggatagtctttgcacgatgattggactcttcactctgtgg |
242 |
Q |
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| T |
9507409 |
ttagtttctataatatagcaataacatgtttaggatagtctttgcacaatgattggactcttcaccctgtgg |
9507338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 9507586 - 9507544
Alignment:
| Q |
5 |
agccttctctcatgatttcattctgcaagtaaaacttcccttc |
47 |
Q |
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| T |
9507586 |
agccttctctcatgattttattctgcaagtaaaactacccttc |
9507544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 12859875 - 12859941
Alignment:
| Q |
82 |
attttggattattatgaaatcaacaagaacaagaacaactatagagatacaaagcatcaaaatttatt |
149 |
Q |
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| T |
12859875 |
attttagactattatgaaa-caacatgaacaagaacaactatagagatacaaagcatcataatttatt |
12859941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 235
Target Start/End: Complemental strand, 19824262 - 19824102
Alignment:
| Q |
71 |
atgtatattgtattttggattattatgaaatcaacaagaacaagaacaactatagagatacaaagcatcaaaatttatttgagactcaatagtcacacat |
170 |
Q |
| |
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|||| ||||| ||||| || ||||||||||||||| |||| || ||||||||||||||||| |||||| ||||||| ||||||||||| ||| | || |
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| T |
19824262 |
atgtgtattgaattttacataattatgaaatcaacatgaacgcaaataactatagagatacaaaacatcaagatttattcgagactcaataatcatatat |
19824163 |
T |
|
| Q |
171 |
ttagtttctataatatagcaataacat-gtttaggatagtctttgcacgatgattggactcttcac |
235 |
Q |
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|| || | |||| ||| ||||| ||||| |||| ||||||||| ||||||||||||||||| |
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| T |
19824162 |
ttgattgccataa-----caaaaacatggtttatgatattctttgcacaatgattggactcttcac |
19824102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 19889351 - 19889261
Alignment:
| Q |
71 |
atgtatattgtattttggattattatgaaatcaacaagaacaagaacaactatagagatacaaagcatcaaaatttatttgagactcaata |
161 |
Q |
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|||| ||||| |||| |||||||||||||||| ||| ||||| || ||||||| ||||||||| |||| ||||||| ||||||||||| |
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| T |
19889351 |
atgtgtattgaatttgggattattatgaaatcgacatgaacacaaataactataaagatacaaaatatcatgatttattcgagactcaata |
19889261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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