View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10420_high_3 (Length: 361)
Name: NF10420_high_3
Description: NF10420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10420_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 35127592 - 35127944
Alignment:
| Q |
1 |
aatcttaaatcttttagtcttggtttgtgctgctacgaaagcattctgtgtaatttctacaactgcttaatgcttattgtgttggctttactttttcccc |
100 |
Q |
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| T |
35127592 |
aatcttaaatcttttagtcttggtttgtgctgctacgaaagcattctgtgtaatttctacaactgcttaatgcttattgtgttggctttactttttcccc |
35127691 |
T |
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| Q |
101 |
tcctttttatgtaattttacttttcacagttcagatatgcatttgatctgaatttacacgattggaagacaatggagtgtgcaatgaaaatatcatgtcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127692 |
tcctttttatgtaattttacttttcacagttcagctttgcatttgatctgaatttacacgattggaagacaatggagtgtgcaatgaaaatatcatgtcg |
35127791 |
T |
|
| Q |
201 |
cctagctcctacctctaattgcatatgcccaaagatttgatgctgtaaaggacaattgggtttaaacatacagcgaatctgattctgctattgcatctgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35127792 |
cctagctcctacctctaattgcatatgcccaaagatttgatgctttaaaggacaattgggtttaaacatacagcgaatctgattctgctatttcatctgg |
35127891 |
T |
|
| Q |
301 |
aattaaataagtaatttcaatggatgtcaaaacggctgctagtaattcttctc |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127892 |
aattaaataagtaatttcaatggatgtcaaaacggctgctagtaattcttctc |
35127944 |
T |
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