View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10420_high_4 (Length: 336)
Name: NF10420_high_4
Description: NF10420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10420_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 33720481 - 33720585
Alignment:
| Q |
20 |
aaacaatatgttaaggaagagattgtgatagataaagagaaattgtgaaaaaatttgaggatagaaagtctaatgttaatgaaaaggagctttcagatga |
119 |
Q |
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| T |
33720481 |
aaacattatgttaaggaagagattgtgatagataaagagaaattttggaaaaatttgaggatagaaagtctaatgttaatgaaaaggagctttcagatga |
33720580 |
T |
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| Q |
120 |
tacca |
124 |
Q |
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| T |
33720581 |
tacca |
33720585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 21147260 - 21147329
Alignment:
| Q |
39 |
agattgtgatagataaagagaaattgtgaaaaaatttgaggatagaaagtctaatgttaatgaaaaggag |
108 |
Q |
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| T |
21147260 |
agattgtgatagagaaagagaaattgacgaaaaagttgagaatagaaagtctaatgttaaggaagaggag |
21147329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 33710189 - 33710227
Alignment:
| Q |
129 |
attaaaagttagctcacaatcaaatgcaattctctcatc |
167 |
Q |
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| T |
33710189 |
attaaaagttagctcataatcaaatgcaattctctcatc |
33710227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 326
Target Start/End: Original strand, 33710320 - 33710360
Alignment:
| Q |
286 |
ctcaacacctccagataatgtaaatgttgtctccacctttg |
326 |
Q |
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| T |
33710320 |
ctcaacacctccatataatgtaaatgttgtctccacttttg |
33710360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 21212452 - 21212523
Alignment:
| Q |
39 |
agattgtgatagataaagagaaattg-tgaaaaaatttgaggatag-aaagtctaatgttaatgaaaaggag |
108 |
Q |
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| T |
21212452 |
agattgtgatagagaaagagaaattgaggaaaaaagttgagaatagaaaagtctaatgttaaggaataggag |
21212523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 21184361 - 21184423
Alignment:
| Q |
46 |
gatagataaagagaaattgtgaaaaaatttgaggatagaaagtctaatgttaatgaaaaggag |
108 |
Q |
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| T |
21184361 |
gatagagaaagagaaattgaggaaaaagttgagaatagaaagtctgatgttaaggaagaggag |
21184423 |
T |
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