View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10420_low_1 (Length: 804)
Name: NF10420_low_1
Description: NF10420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10420_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 649; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 84 - 785
Target Start/End: Original strand, 4748450 - 4749152
Alignment:
| Q |
84 |
tgaatcccctggacaataggtggctctgcccctgatcacaaccttacttacgattctgcgaccactcaaatatgatgttaatatcattttaatatctaat |
183 |
Q |
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| T |
4748450 |
tgaatcccctggacaataggtggctccgcccctgatgacaaccttact-acgattctgcgaccactcaaatatgatattaatatcattttaatatctaat |
4748548 |
T |
|
| Q |
184 |
ttctccaaagacaaaggcacaaattatcaaaatagactctgctta--agaccactttttatatttccaccaatgttccaacatatactactcaagaaaat |
281 |
Q |
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| T |
4748549 |
ttctccaaagacaaaggcacaaaatatcaaaaaagactctgcttataagaccactttttatatttccaccaatgttccaacatatactactcaagaaaat |
4748648 |
T |
|
| Q |
282 |
ttactcaaaacatagtgcaaaaacatctatagtcgtggatgctcataaatgtgactaactttggatggtttttattttataaaatacagatatggcagga |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4748649 |
ttactcaaaacatagtgcaaaaacatctatagtcgtggatgctcataaatgtgactaactttggatggtttttattttataaaatacagatatggcagga |
4748748 |
T |
|
| Q |
382 |
caggtatgtacaggacacatttgtttgggtatccaaccatcatagtttgctcgccagaaacatgtcgtaatgtactaaaagacgaggaacatctcaagcc |
481 |
Q |
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| T |
4748749 |
caggtatgtacaggacacatttgtttgggtatccaaccgtcatagtttgctcgccagagacatgtcgtaatgtactaaaagacgaggaacatctcaagcc |
4748848 |
T |
|
| Q |
482 |
aggataccctgcttcagctatggcacttgcagggaaaaaatcattccatggaatatcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctcca |
581 |
Q |
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| T |
4748849 |
aggataccctgcttcagctatggcacttgcagggaaaaaatcattccatggaatatcaagtgccgagcataaacgtttgcgaaaggtaaccacgtctcca |
4748948 |
T |
|
| Q |
582 |
ataaatggtcacgaattgtacaattatattggtctcatagaagatattgtagtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttc |
681 |
Q |
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| T |
4748949 |
ataaatggtcacgaattgtacaattatattggtctcatagaagatattgtagtgaaaaatttagaagattcgtctaaaacgaacacaccggttgagtttc |
4749048 |
T |
|
| Q |
682 |
tcaaagagaccaaaaagttcacttttgatgtcatcacttctgttttcttttcctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacat |
781 |
Q |
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| T |
4749049 |
tcaaagaggccaaaaagttcacttttgatgtcatcacttctgtcttcttttcctctgatcgtgaacatgctgaccttgctttggttgagcatttgtacat |
4749148 |
T |
|
| Q |
782 |
tgat |
785 |
Q |
| |
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|||| |
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|
| T |
4749149 |
tgat |
4749152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 369 - 785
Target Start/End: Original strand, 4756571 - 4756990
Alignment:
| Q |
369 |
agatatggcaggacaggtatgtacaggacacatttgtttgggtatccaaccatcatagtttgctcgccagaaacatgtcgtaatgtactaaaagacgagg |
468 |
Q |
| |
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| T |
4756571 |
agatatggaaagacaggtatgtatagaacacatttgtttggtagtccaagcatcatagtatgcacaccagagacatgtcgtaaggttctaaccgacgaag |
4756670 |
T |
|
| Q |
469 |
aacatctcaagccaggataccctgcttcagctatggcacttgcagggaaaaaatcattccatggaatatcaagtgccgagcataaacgtttgcgaaaggt |
568 |
Q |
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| T |
4756671 |
agaatctcaaggttggataccctcattcaaccatggtccttacaggtaaaagatcattccatggaatctcaaattctgaacacaaacgtttgagacgttt |
4756770 |
T |
|
| Q |
569 |
aaccacgtctccaataaatggtcacgaa---ttgtacaattatattggtctcatagaagatattgtagtgaaaaatttagaagattcgtctaaaacgaac |
665 |
Q |
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| T |
4756771 |
aatcacttctcccataaatggtgacgaagcattgtcaacttatattagtctcattgaggatagtgctgtgaaacatttagaagagttgtctaaaatgaac |
4756870 |
T |
|
| Q |
666 |
acaccggttgagtttctcaaagagaccaaaaagttcacttttgatgtcatcacttctgttttcttttcctctgatcgtgaacatgctgaccttgctttgg |
765 |
Q |
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||||| ||||||||| ||||||| | |||||| ||||||| ||||||||| | | ||| |||| ||||||||||| || | ||||||| ||||| |
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| T |
4756871 |
acaccatgtgagtttcttaaagagatgagaaagtttgcttttgaagtcatcactaccatcttcatttcttctgatcgtgatcacgtggaccttggtttgg |
4756970 |
T |
|
| Q |
766 |
ttgagcatttgtacattgat |
785 |
Q |
| |
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|||| |||||||||||||| |
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| T |
4756971 |
ttgaaaatttgtacattgat |
4756990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 4748413 - 4748448
Alignment:
| Q |
18 |
atgaaggtgcaagattcatacctgagggggttcata |
53 |
Q |
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| T |
4748413 |
atgaaggtgcaagactcatacctgagggggttcata |
4748448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 40875958 - 40875921
Alignment:
| Q |
40 |
tgagggggttcatatagaaaaacattgggtaattgggg |
77 |
Q |
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|||||||||| |||||||||||||| |||||||||||| |
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| T |
40875958 |
tgagggggttgatatagaaaaacatagggtaattgggg |
40875921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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