View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10420_low_10 (Length: 223)
Name: NF10420_low_10
Description: NF10420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10420_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 39954268 - 39954105
Alignment:
| Q |
39 |
caaccgagcagaccagctataaaatctcattaaccttccattaaagttttgatgattataacaaaatagatagaatacttgcaatgcttttctgtaaatt |
138 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39954268 |
caacggagcagaccagctataaaatctcattaaccttccattcaagttttgatgattataacaaaatagatagaatacttgcaatgcttttctgtaaatt |
39954169 |
T |
|
| Q |
139 |
ttccactataatgcaaaagttaaaatacttgctatgcttttatgtaaattttccctgatgctac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39954168 |
ttccactataatgcaaaagttaaaatacttgctatgcttttatgtaaattttccctgatgctac |
39954105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 1685608 - 1685651
Alignment:
| Q |
39 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
82 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1685608 |
caaccgagcagaccagctacaaaatctcattaaccttccattaa |
1685651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 39954000 - 39953963
Alignment:
| Q |
74 |
ttccattaaagttttgatgattataacaaaatagatag |
111 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
39954000 |
ttccattaaagttttgataattataaccaaatagatag |
39953963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 37478357 - 37478400
Alignment:
| Q |
39 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
82 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37478357 |
caaccgagcagaccagctacaaaatctcattaaccttccattaa |
37478400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 21887028 - 21887071
Alignment:
| Q |
39 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
82 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21887028 |
caaccaagcagaccagctacaaaatctcattaaccttccattaa |
21887071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 52037949 - 52037992
Alignment:
| Q |
39 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
82 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52037949 |
caaccgagcagaccagctacaaaatctcattaaccttccattaa |
52037992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 41053291 - 41053248
Alignment:
| Q |
39 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
82 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
41053291 |
caaccgagcagaccagctacaaaatctcattaaacttccattaa |
41053248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 44800148 - 44800105
Alignment:
| Q |
39 |
caaccgagcagaccagctataaaatctcattaaccttccattaa |
82 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
44800148 |
caaccgagcagaccaactacaaaatctcattaatcttccattaa |
44800105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University