View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10420_low_2 (Length: 504)
Name: NF10420_low_2
Description: NF10420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10420_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 51 - 489
Target Start/End: Original strand, 31414372 - 31414810
Alignment:
| Q |
51 |
taagggttttgttatacatttattgaacaactgaaagtgatgaccattggcacaactcaaaaattcatgaagtttcacagaaatgaccttaagggaatat |
150 |
Q |
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| T |
31414372 |
taagggttttgttatacatttattgaacaactgaaagtgatgaccattggcacaactcaaaaattcatgaagtttcacagaaatgaccttaagggaatat |
31414471 |
T |
|
| Q |
151 |
atagattaaataatgaaataccacacgcggtttcaatgttagtttttgaataaacaatttcataaacaagaattgttgcaatatataaataaagttagta |
250 |
Q |
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| T |
31414472 |
atagattaaataatgaaataccacacgcggtttcaatgttagtttttgaataaacaatttcataaacaagaattgttgcaatatataaataaagttagta |
31414571 |
T |
|
| Q |
251 |
tagcaccatatccacaagtctcattgcttccacaaacggtagactttagatccaaaataccactactctttcctccaaaacatggcttcaaccaccaaag |
350 |
Q |
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| T |
31414572 |
tagcaccatatccacaagtctcattgcttccacaaacggtagactttagatccaaaataccactactctttcctccaaaacatggcttcaaccaccaaag |
31414671 |
T |
|
| Q |
351 |
actcagatttggaatatttggaacacattcaacaataccttctttttgatgattctagcatgctgaaatctcatcaaccttttccaagccctaaaagtga |
450 |
Q |
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| T |
31414672 |
actcagatttggaatatttggaacacattcaacaataccttctttttgatgattctagcatgctgaaatctcatcaaccttttccaagccctaaaagtga |
31414771 |
T |
|
| Q |
451 |
caatgatttagacacaactgtagaggcgcgtgaagtaag |
489 |
Q |
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| T |
31414772 |
caatgatttagacacaactgtagaggcgcgtgaagtaag |
31414810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 62 - 488
Target Start/End: Original strand, 31410413 - 31410848
Alignment:
| Q |
62 |
ttatacatttattgaacaactgaaagtgatgaccattggcacaactcaaaaattcatgaagtttcacagaaatgaccttaagggaatatatagattaaat |
161 |
Q |
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|||| ||||| ||||||||| |||||||||||| ||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31410413 |
ttattcatttgttgaacaacaaaaagtgatgaccgttggcacaactaattagttcaggaagtttcacagaaatgaccttaagggaatatatagattaaat |
31410512 |
T |
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| Q |
162 |
aatgaaataccacacgcggtttcaatgttagtttttgaataaacaatttcataaacaagaattgttgcaatatataaataa----agttagtatagcacc |
257 |
Q |
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| T |
31410513 |
aatgaaataacacacgctgtttcaatgttcatttttgaataaacaatttcataaacaagagttgttgctatatatatataagtgtagtgagtagagca-c |
31410611 |
T |
|
| Q |
258 |
atatccacaagtctcattgcttccacaaacggtagactttagatccaaaataccactac----tctttcctcca----aaacatggcttcaaccaccaaa |
349 |
Q |
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| T |
31410612 |
atattcccaagtctcagtgcttccacaaacg--aaaacttagatctaaattaacaccactaattctctcatctaaattaaacatggcttctaccaccaat |
31410709 |
T |
|
| Q |
350 |
gactcagatttggaatatttggaacacattcaacaataccttctttttgatgattctagcatgctgaaatctcatcaaccttttccaagccctaaaagtg |
449 |
Q |
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| T |
31410710 |
gactcagattttgcctatttggaacatattcaacaataccttctttttgatgattccagctttctaacatcttatcaaccttctccaagccctaaaagtg |
31410809 |
T |
|
| Q |
450 |
acaatgatttagacacaactgtagaggcgcgtgaagtaa |
488 |
Q |
| |
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||||||| | |||||||| |||||||||||||||||||| |
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| T |
31410810 |
acaatgagtcagacacaattgtagaggcgcgtgaagtaa |
31410848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 31407530 - 31407594
Alignment:
| Q |
341 |
accaccaaagactcagatttggaatatttggaacacattcaacaataccttctttttgatgattc |
405 |
Q |
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| T |
31407530 |
accacaaaagactcagagtttgcatatttggaagatattcaacaataccttcttcatgatgattc |
31407594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31414323 - 31414353
Alignment:
| Q |
1 |
ctaattatattcaacaaagggagaagagatt |
31 |
Q |
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| T |
31414323 |
ctaattatattcaacaaagggagaagagatt |
31414353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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