View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10420_low_8 (Length: 243)
Name: NF10420_low_8
Description: NF10420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10420_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1476458 - 1476680
Alignment:
| Q |
1 |
tcaatgatatgatagtcacaaagtccaaatacaaacaatagcaattgcaacatatagaacaaataacattaaaaataagagtgtttaaattgacttatct |
100 |
Q |
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| T |
1476458 |
tcaatgatatgatagtcacaaagtccaaatacaaacaatagcaattgcaacatatagaacaaataacattaaaaataagagtgtttaaattgacttatct |
1476557 |
T |
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| Q |
101 |
gggcatatttattgcataaacacttatgatactatttagacaactcgtggaaacaatttataacatgatcataaattgttttcagttattaaataactaa |
200 |
Q |
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| T |
1476558 |
aagcatatttattgcataaacacttatgatactatttagacaactcgtggaaacaatttatgacatgatcataaattgtttttagttattaaataactaa |
1476657 |
T |
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| Q |
201 |
cattattccaataatgatgatta |
223 |
Q |
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||| ||||||||||||||||||| |
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| T |
1476658 |
cataattccaataatgatgatta |
1476680 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 32859933 - 32859970
Alignment:
| Q |
148 |
tggaaacaatttataacatgatcataaattgttttcag |
185 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
32859933 |
tggaaacaatttataacatgttcataaattgttttcag |
32859970 |
T |
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