View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10421_high_2 (Length: 443)
Name: NF10421_high_2
Description: NF10421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10421_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 7 - 426
Target Start/End: Original strand, 33931215 - 33931634
Alignment:
| Q |
7 |
acatgtactcatacagattaagaaattacaaagcataaaagcagtttgtttatacacagaaattttattaatttgttttgtatgtaaataaatcaataaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931215 |
acatgtactcatacagattaagaaattacaaagcataaaagaagtttgtttatacacagaaattttattaatttgttttgtatgtaaataaatcaataaa |
33931314 |
T |
|
| Q |
107 |
atcaactcatctactctacagaagatatttacacataaacgaatcaaaagataacatatcactgcatcattactgtgaattcatcaaagctaagcaaacc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
33931315 |
atcaactcatctactctacagaagatatttacacataaacgaatcaaaagataacatatcactgcatcattgttatgaattcatcaaagctaagcaaacc |
33931414 |
T |
|
| Q |
207 |
atccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaagcatcctcttcaaactcttaggtgtt |
306 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33931415 |
atccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaagcatcctcttcaaactctttggtgtt |
33931514 |
T |
|
| Q |
307 |
ataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatctttcaacttttgttcctctccaccttcctccatcaaagcaattaattcct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33931515 |
ataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctccaccttcttccatcaaagcaattaattcct |
33931614 |
T |
|
| Q |
407 |
ccaaactcaaataaccatca |
426 |
Q |
| |
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|||||||||||||||||||| |
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| T |
33931615 |
ccaaactcaaataaccatca |
33931634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 164 - 426
Target Start/End: Original strand, 33938177 - 33938439
Alignment:
| Q |
164 |
atcactgcatcattactgtgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttaga |
263 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33938177 |
atcactgcatcattgttatgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttaga |
33938276 |
T |
|
| Q |
264 |
ctcacccatcttcttaagcatcctcttcaaactcttaggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatctttcaac |
363 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33938277 |
ctcacccatcttcttaagcatcctcttcaaactctttggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaac |
33938376 |
T |
|
| Q |
364 |
ttttgttcctctccaccttcctccatcaaagcaattaattcctccaaactcaaataaccatca |
426 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33938377 |
ttttgttcctctccaccttcttccatcaaagcaattaattcctccaaactcaaataaccatca |
33938439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 165 - 377
Target Start/End: Original strand, 42839791 - 42840003
Alignment:
| Q |
165 |
tcactgcatcattactgtgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagac |
264 |
Q |
| |
|
||||| |||||| | | |||| || ||||| ||||||| |||||| |||||||||||||| ||||||||| |||||||||| ||||| |||||||| |
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| T |
42839791 |
tcactccatcatgattctgaactcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcactttacattcttcaatggacttagaa |
42839890 |
T |
|
| Q |
265 |
tcacccatcttcttaagcatcctcttcaaactcttaggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatctttcaact |
364 |
Q |
| |
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|| |||| ||| || | |||||||||||||||||| |||||||| | |||||| ||| ||||||||| ||||| ||||| |||||||| ||||| | |
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| T |
42839891 |
tcccccaactttttcaacatcctcttcaaactctttggtgttatgtacccacacccttcatcatcatacatttcaaaagcttccctcaaatccttcaatt |
42839990 |
T |
|
| Q |
365 |
tttgttcctctcc |
377 |
Q |
| |
|
||| ||||||||| |
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|
| T |
42839991 |
tttcttcctctcc |
42840003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 377
Target Start/End: Original strand, 42849603 - 42849798
Alignment:
| Q |
182 |
tgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaag |
281 |
Q |
| |
|
||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||| ||| ||||| ||||| |||||||| || |||| || || | |
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| T |
42849603 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
42849702 |
T |
|
| Q |
282 |
catcctcttcaaactcttaggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatctttcaacttttgttcctctcc |
377 |
Q |
| |
|
||||||||||||||| || |||||||| || ||||| ||| |||||||||| ||||| ||||| |||||||| ||||| |||| ||||||||| |
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| T |
42849703 |
catcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctcc |
42849798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 182 - 377
Target Start/End: Original strand, 42846616 - 42846811
Alignment:
| Q |
182 |
tgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaag |
281 |
Q |
| |
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||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||| ||| ||||| ||||| |||||||| || |||| || || | |
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| T |
42846616 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
42846715 |
T |
|
| Q |
282 |
catcctcttcaaactcttaggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatctttcaacttttgttcctctcc |
377 |
Q |
| |
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||||||||||||||| || || ||||| || ||||| ||| |||||||||| ||||| ||||| |||||||| ||||| |||| |||||||| |
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| T |
42846716 |
catcctcttcaaactttttggcgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcctcctctcc |
42846811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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