View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10421_high_4 (Length: 379)
Name: NF10421_high_4
Description: NF10421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10421_high_4 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 24 - 361
Target Start/End: Complemental strand, 9249114 - 9248773
Alignment:
| Q |
24 |
aaccacataaagattgggaggccaccgttgaaaacaaacaaaacgcgacagaacaaatggaagccaccaaaatnnnnnnngaggcttgttagaccgtgca |
123 |
Q |
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| T |
9249114 |
aaccacataaagattgggaggccaccgttgaaaacaaacaaaacgcgacagaacaaatggaagccaccaaaataaaaaa-gaggcttgttagaccgtgca |
9249016 |
T |
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| Q |
124 |
aaacaatgacccaatttagtaggtctgattctaaacaaataagccatatccaaagttgttgttcgagtgaaaaagactcataactttcaccaggaattga |
223 |
Q |
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| T |
9249015 |
aaacaatgacccaatttagtaggtttgattctaaacaaataagccatatccaaagttggtgttcgagtgaaaaagactcataactttcaccaggaattga |
9248916 |
T |
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| Q |
224 |
cgaactaatctcacaaagacgaaggccgaggaacaccgttgaagaggcctaaccaaacaccacaaacgaaggtggcgtgtgactgaa-----cccaatgg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9248915 |
cgaactaatctcacaaagacgaaggccgaggaacaccgttgaagaggcctaaccaaacaccacaaacgaaggtggcgtgtgactgaaaatatcccaatgg |
9248816 |
T |
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| Q |
319 |
cactaatgacggtcagttggttgttggccttaagggtccgaga |
361 |
Q |
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| T |
9248815 |
cactaatgacggtcagttggttgttggccttaagggcccgaga |
9248773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 9244925 - 9244557
Alignment:
| Q |
1 |
tagaagccacagtagaaggatccaaccacataaagattgggaggccaccgttgaaaacaaacaaaacgcgacagaacaaatggaagccaccaaaatnnnn |
100 |
Q |
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| T |
9244925 |
tagaagccaccgtagaaggctccaaccacataaagattgggaggccaccgttgaaaacaaacaaaacgcgacagaacaaatggaagccaccaaaataaaa |
9244826 |
T |
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| Q |
101 |
nnnga---ggcttgttagaccgtgcaaaacaatgacccaatttagtaggtctgattctaaacaaataagccatatccaaagttgttgttcgagtgaaaaa |
197 |
Q |
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| T |
9244825 |
taaaaaaaggcttgttagaccgtgcaaaccaatgacccaatttagtatgtctgattctaaacaaataagccatatccaaagttgttgttcaagtgaaaaa |
9244726 |
T |
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| Q |
198 |
gactcataactttcaccaggaattgacgaactaatctcacaaagacgaaggccgaggaacaccgttgaagaggcctaaccaaacaccacaaacgaaggtg |
297 |
Q |
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| T |
9244725 |
gactcataactttcaccaggaattgacgaactaatctcacgaagacgaaggccgaggaacaccgttgaagaggcctaaccaaacaccacaaacgaaggtg |
9244626 |
T |
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| Q |
298 |
gcgtgtgactgaa-----cccaatggcactaatgacggtcagttggttgttggccttaagggtccgaga |
361 |
Q |
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| T |
9244625 |
gcgtgtgactgaaagtatcccaatggcactaatgacggtcagttggtggttggccttaagggcccgaga |
9244557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 4837 - 5204
Alignment:
| Q |
1 |
tagaagccacagtagaaggatccaaccacataaagattgggaggccaccgttgaaaacaaacaaaacgcgacagaacaaatggaagccaccaaaatnnnn |
100 |
Q |
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| T |
4837 |
tagaagccaccgtagaaggctccaaccacataaagattgggaggccaccgttgaaaacaaacaaaacgcgacagaacaaatggaagccaccaaaataaaa |
4936 |
T |
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| Q |
101 |
nnnga----ggcttgttagaccgtgcaaaacaatgacccaatttagtaggtctgattctaaacaaataagccatatccaaagttgttgttcgagtgaaaa |
196 |
Q |
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| T |
4937 |
ataaaaaaaggcttgttagaccgtgcaaaacaatgacccaatttagtag-tctgattctaaacaaataagccatatccaaagttgttgttc-agtgaaaa |
5034 |
T |
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| Q |
197 |
agactcataactttcaccaggaattgacgaactaatctcacaaagacgaaggccgaggaacaccgttgaagaggcctaaccaaacaccacaaacgaaggt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5035 |
agactcataactttcaccaggaattgacgaactaatctcacgaagacgaaggccgaggaacaccgttgaagaggcctaaccaaacaccacaaacgaaggt |
5134 |
T |
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| Q |
297 |
ggcgtgtgactgaa-----cccaatggcactaatgacggtcagttggttgttggccttaagggtccgaga |
361 |
Q |
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| T |
5135 |
ggcgtgtgactgaaagtatcccaatggcactaatgacggtcagttggtggttggccttaagggcccgaga |
5204 |
T |
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