View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10421_low_1 (Length: 877)
Name: NF10421_low_1
Description: NF10421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10421_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 14 - 601
Target Start/End: Original strand, 36846564 - 36847146
Alignment:
| Q |
14 |
tggacatcataatgaaagctataaaacgaacaggaaagtccaggtagaaaatgggatgaagtcgtcttttgggacgaatccctatatttataagtacatg |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36846564 |
tggacaacataatgaaagctataaaacgaaaaagaaagtccagggagaaaatgggatgaagtcgtcttttgggacgaatccctatatttataagtacatg |
36846663 |
T |
|
| Q |
114 |
gggctgatatgttgtaccagttataacagaaaaattagaatagtaaactctctctttgtagtgaatctaatctaattacaataataagctataattgagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36846664 |
gggctgatatgttgtaccagttataacagaaaaattagaatagtaaactctctctttgtagtgaatctaatctaattacaataataagctataattgagt |
36846763 |
T |
|
| Q |
214 |
ataaaagagttgcacaatatgaatattgatctattcaaacataggttgcacactattctttttatatgtgttcgcatctggtagtaccaccatcaaatca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36846764 |
ataaaagagttgcacaatatgaatattgatctattcaaacataggttgcacactattctttt--tatgtgttcgcatctggtagtaccaccatcgaatca |
36846861 |
T |
|
| Q |
314 |
taatcaatttccaacagggaacttgaatgcttgcgctgctagtgaaattaccagagccaaataagaaaagaatcctgagcaaaaaagaatcctgtaaatt |
413 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36846862 |
taatcaatctccaacggggaacttgaatgcttccgctgctagtgaaattaccagagccaaataagaaaagaatcctgagcaaaaaagaatcctgtaaatt |
36846961 |
T |
|
| Q |
414 |
cataaaatcattctccatagtttttacaataatatagataagtaaatctctaatcatttagataacatgcaactttaaaatcgataaatgcaactttaac |
513 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36846962 |
cataaaatcattctccatagtttttac---aatatagataagtaaatctctaatcatttagataacatgcaactttaaaatcgataaatgcgactttaac |
36847058 |
T |
|
| Q |
514 |
atgcaactttaaaatctagtggtgtagacatgttaactgtatgcctacaaaactaggtactcgaaattgttccctaacaatgtgttgc |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36847059 |
atgcaactttaaaatctagtggtgtagacatgttaactgtatgcttacaaaactaggtactcgaaattgttccctaacaatgtgttgc |
36847146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 598 - 855
Target Start/End: Original strand, 36847193 - 36847450
Alignment:
| Q |
598 |
ttgcaatagacttggttaacagaatttgacttccctaacatacaactaaccatcctaaccaactcaaccgtgtaatacactcccaaaagtcgaagatcgg |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36847193 |
ttgcaatagacttggttaacagaatttgacttccctaacatacaactaaccatcctaaccaactcaaccgtgtaataccctcccaaaagtcgaagatcgg |
36847292 |
T |
|
| Q |
698 |
taaatgtccatcaatctgagcttggctataagatggatgaatggctgaggagcaagagccatagtgaagacgattgctatctgattagctgaagactggc |
797 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36847293 |
taaatgtccatcaatctgagcttggctataagatggacgaatggctgaggagcaagagccatagtgaagacgattgctatctgattagctgaagactggc |
36847392 |
T |
|
| Q |
798 |
gataacttcatgaaacgaagtgatagtctctcgtgaaccacatcacaatcgatctcaa |
855 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36847393 |
gataacttcatgaaacgaagtgatagtctctcgtgaaccacatcacaatcaatctcaa |
36847450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 510 - 601
Target Start/End: Complemental strand, 29397237 - 29397146
Alignment:
| Q |
510 |
taacatgcaactttaaaatctagtggtgtagacatgttaactgtatgcctacaaaactaggtactcgaaattgttccctaacaatgtgttgc |
601 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29397237 |
taacatgcaactttaaaatctaacggtgtaaacatgttaactgtatgcttacaaaactaggtactcgaaattgttccctaacaatgtgttgc |
29397146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 447 - 495
Target Start/End: Complemental strand, 29397266 - 29397218
Alignment:
| Q |
447 |
atagataagtaaatctctaatcatttagataacatgcaactttaaaatc |
495 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29397266 |
atagataagtaaatctctaatcatttaggtaacatgcaactttaaaatc |
29397218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 598 - 656
Target Start/End: Complemental strand, 29397099 - 29397041
Alignment:
| Q |
598 |
ttgcaatagacttggttaacagaatttgacttccctaacatacaactaaccatcctaac |
656 |
Q |
| |
|
|||||| |||||| |||||||||| |||| |||||||||||| |||||||||||||||| |
|
|
| T |
29397099 |
ttgcaacagacttagttaacagaagttgatttccctaacataaaactaaccatcctaac |
29397041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 541 - 601
Target Start/End: Complemental strand, 15667410 - 15667350
Alignment:
| Q |
541 |
acatgttaactgtatgcctacaaaactaggtactcgaaattgttccctaacaatgtgttgc |
601 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15667410 |
acatgttaactgtatgcttacaaaactaggtactcgaaattgttccctaacaatgtgttgc |
15667350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 600 - 657
Target Start/End: Complemental strand, 15667301 - 15667244
Alignment:
| Q |
600 |
gcaatagacttggttaacagaatttgacttccctaacatacaactaaccatcctaacc |
657 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
15667301 |
gcaatagacttggttaacagaagtagacttccctaacataaaactaaccatcctaacc |
15667244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 12859032 - 12859111
Alignment:
| Q |
335 |
cttgaatgcttgcgctgctagtgaaattaccagagccaaataagaaaagaatcctgagcaaaaaagaatcctgtaaattc |
414 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||| ||||||||||||||||| ||||||||| |||||||||| |||| |
|
|
| T |
12859032 |
cttgaatgcttctgctgctactgaaattacaagagacaaataagaaaagaatcttgagcaaaattgaatcctgtatattc |
12859111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University