View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10421_low_10 (Length: 250)
Name: NF10421_low_10
Description: NF10421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10421_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 4665664 - 4665801
Alignment:
| Q |
101 |
gtacatggtataggagcaaaagaattatttaaagcaaccaaagatatgagaatattgatgaattaaggtaccggattaagagtagaatgctctctgaagt |
200 |
Q |
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| T |
4665664 |
gtacatggtataggagcaaaagaattatttaaagcaaccaaagatatgagaatattgatgaattaaggtaccggattaagagtagaatgctctctgaagt |
4665763 |
T |
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| Q |
201 |
tttcctccaaaacttctgattgttcttttgtgagccta |
238 |
Q |
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| T |
4665764 |
tttcctccaaaacttctgattgttcttttgtgagccta |
4665801 |
T |
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4665564 - 4665602
Alignment:
| Q |
1 |
tcattttatatatgctacacacaattgagtatgcataag |
39 |
Q |
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| T |
4665564 |
tcattttatatatgctacacacaattgagtgtgcataag |
4665602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 47874586 - 47874517
Alignment:
| Q |
169 |
taccggattaagagtagaatgctctctgaagttttcctccaaaacttctgattgttcttttgtgagccta |
238 |
Q |
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| T |
47874586 |
taccggattgagagtagaatgatctttgaaggtgtcctccaagactgcagattgttctttggtaagccta |
47874517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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