View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10421_low_11 (Length: 247)
Name: NF10421_low_11
Description: NF10421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10421_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6452717 - 6452478
Alignment:
| Q |
1 |
aaggtgtgccaagaagaagcaaatatttcaaatacaaaaacaactaaccaatgttcattaaatacaatgacgctgataaaaagaaaacaaaacaatttaa |
100 |
Q |
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| T |
6452717 |
aaggtgtgccaagaagaaacaaatagttcaaatacaaaaacagctaaccaatgttcattaaatacaatgacgctgatataaagaaaacaaaacaatttaa |
6452618 |
T |
|
| Q |
101 |
ttagccaacattcaaacattcaaatggatgttgccaccaaccatcaaaatcaaaagaaacgaatgcaatgttatgcttcagccactataaagacacatat |
200 |
Q |
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| T |
6452617 |
ttagccaacattcaaacattgaaatggatgctgccaccaaccatcaaaatcaaaagaaacgaatgcaacgttatgcttcagccaccataaagacacatat |
6452518 |
T |
|
| Q |
201 |
ttgacgttatcgagcaatgtgatatcgatttcttcctttg |
240 |
Q |
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| T |
6452517 |
ttgacgttatccagcaatgtgatatcgatttcttcctttg |
6452478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 16899518 - 16899471
Alignment:
| Q |
171 |
ttatgcttcagccactataaagacacatatttgacgttatcgagcaat |
218 |
Q |
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| T |
16899518 |
ttatgcttcagacaccacaaagacacatatttgaccttatcgagcaat |
16899471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 20561919 - 20561965
Alignment:
| Q |
171 |
ttatgcttcagccactataaagacacatatttgacgttatcgagcaa |
217 |
Q |
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| T |
20561919 |
ttatacttcaaccaccataaagacacatatttgaccttatcgagcaa |
20561965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 27984345 - 27984440
Alignment:
| Q |
122 |
aaatggatgttgccaccaaccatcaaaatcaaaagaaacgaatgcaatgttatgcttcagccactataaagacacatatttgacgttatcgagcaa |
217 |
Q |
| |
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||||||||| |||||||||||| |||| |||||||| || |||||| ||||||||||||||| | ||||||||||||||||| ||||||||||| |
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| T |
27984345 |
aaatggatgctgccaccaaccagcaaactcaaaagatacaaatgcagcattatgcttcagccacgagaaagacacatatttgaccttatcgagcaa |
27984440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 28883008 - 28883168
Alignment:
| Q |
74 |
tgataaaaagaaaacaaaacaatttaattagccaacattcaaacattcaaatggatgttgccaccaaccatcaaaatcaaaagaaacgaatgcaatgtta |
173 |
Q |
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||||||||| |||| ||| |||| ||||| | ||||| |||| | ||||||||||||| |||||| | | |||| |||||||| || ||||||| ||| |
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| T |
28883008 |
tgataaaaaaaaaaaaaagcaatacaattaactaacatccaaatagtcaaatggatgttcccaccagcaagcaaactcaaaagatacaaatgcaacatta |
28883107 |
T |
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| Q |
174 |
tgcttcagccactataaagacacatatttgacgttatcgagcaa-tgtgatatcgatttct |
233 |
Q |
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|| || |||||| ||||||| ||||||||||| || |||||||| ||||||||| |||||| |
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| T |
28883108 |
tgttttagccaccataaagatacatatttgaccttgtcgagcaactgtgatatcaatttct |
28883168 |
T |
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