View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10421_low_2 (Length: 546)
Name: NF10421_low_2
Description: NF10421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10421_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 6 - 298
Target Start/End: Complemental strand, 3959848 - 3959556
Alignment:
| Q |
6 |
aggagcagagaagaagggatatatttactctataagtttcaccaacgataaagggcatatatatgtaccaaaataattttgaaaccaatgttttgctgcc |
105 |
Q |
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| T |
3959848 |
aggagcagaaaagaagggatatatttactatataagtttcaccaacgataaagggcatatatatgtaccaaaataattttgaaaccaatgttttgctgcc |
3959749 |
T |
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| Q |
106 |
aatttccacattgtgaagggtttctagcggttattatagtcattcgggtttccaaacatgaatgaacgaaaaattctggaccacctcattggggtttttc |
205 |
Q |
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| T |
3959748 |
aatttccacattgtaaagggtttctagcggttattatagtcattcgggtttccatacatgaatgaacaaaaaattctggaccacatcattggggtttttc |
3959649 |
T |
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| Q |
206 |
ttatttaggtttttacaaaaaggaggaaatggaaatttgagaggaaaaggggcatatatttttggcaaactacaaaccaacatgttggtgtct |
298 |
Q |
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| T |
3959648 |
ttatttaggtttttacaaaaaggaggaaatggaaatttgagaggaaaaggggcatatatttttggcaaactacaaaccaacatgttggtgtct |
3959556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 311 - 537
Target Start/End: Complemental strand, 3958558 - 3958338
Alignment:
| Q |
311 |
gttctcatttaaagaagaaagttaaagataacctacaacttacgattacctttcacgtccttgtcctatagccttaattttaatcaagaaggaaaaatca |
410 |
Q |
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| T |
3958558 |
gttctcatttaaagaagaaagttaaagataacctacaacttacgattacctttcacgtcct------atagccttaattttaatcaagaaggaaaaatca |
3958465 |
T |
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| Q |
411 |
agaaacatatgtttgttataaaacagattaatttccattcacttgcgatcagttgcatatacagaattacacattgtgagctgagtttcatacatctact |
510 |
Q |
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| T |
3958464 |
agaaacatttgtttgttataaaacagattaatttccattcatttgcaatcagttgcatatacagaattacgcattgtgagctgagtttcatacatctact |
3958365 |
T |
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| Q |
511 |
tttacaatcctcttatgttattcttct |
537 |
Q |
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| T |
3958364 |
tttacaatcctcttatgttattcttct |
3958338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 4021195 - 4021260
Alignment:
| Q |
94 |
tgttttgctgccaatttccacattgtgaagggtttctagcggttattatagtcattcgggtttcca |
159 |
Q |
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| T |
4021195 |
tgttttgctgccaatttccacaacctgaagggtttctggtggttgttagagtcattagggtttcca |
4021260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 451
Target Start/End: Original strand, 4006977 - 4007032
Alignment:
| Q |
397 |
agaaggaaaaatcaagaaacatatgtttgttataaaac-agattaatttccattca |
451 |
Q |
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| T |
4006977 |
agaaggaaaaatcaagaaatatttttttgttataacacaagattaatttccattca |
4007032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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