View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10421_low_4 (Length: 406)
Name: NF10421_low_4
Description: NF10421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10421_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 42903489 - 42903110
Alignment:
| Q |
1 |
aaccttcctcaccttcacaggttccaatcctattccttcctctcttacattttattggtgttaatttttattaagnnnnnnngtttagccgagttgagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
42903489 |
aaccttcctcaccttcacaggttccaatcctattccttcctctcttacattttattggtgtt----tttattaagaaaaaaagtttagccgagttgagtc |
42903394 |
T |
|
| Q |
101 |
cgaaggctattcaggccggagcaggcctcgagacgtagagaacgtcttatattatattttattgctagtatttattttcaggttctagtttttgattttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42903393 |
cgaaggctattcaggccggagcaggcctcgagacgtagagaacgtcttatatt-----ttattgctagtatttattttcaggttctagtttttgattttc |
42903299 |
T |
|
| Q |
201 |
aaccaaaagatcctgaagatatatatgtggcactagcagttttatctggtagagctgtgccaggtcagatttggactttattcataacttgtgaactttt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42903298 |
aaccaaaagatcctgaagatatatatgtggcactagcagttttatctggtagagctgtgccaggtcagatttggactttattcataacttgtgaactttt |
42903199 |
T |
|
| Q |
301 |
tgattggatttttctctccataaatatttactttctttatataaatcaccaattctgttcatataattctcaggagctgttcttgtgag |
389 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42903198 |
tgattggatttttctctccataaatgtttactttctttacataaatcaccaattctgttcatataattctcaggagctgttcttgtgag |
42903110 |
T |
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