View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10421_low_5 (Length: 401)
Name: NF10421_low_5
Description: NF10421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10421_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 52730402 - 52730034
Alignment:
| Q |
19 |
ccttaatttaattttaattcagtttgttaataattagtcgttaaaatttcagaatagaaaaggtgcggttgaacagaaaggatggaataggaaaggtggc |
118 |
Q |
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| T |
52730402 |
ccttaatttaattttaattcagtttgttaataattagtcgttaaaatttcagaatagaaaaggtgcggttgaacagaaaggatggaataggaaaggtggc |
52730303 |
T |
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| Q |
119 |
aggaacattgttttgtgttgcaggagcatcagtaattacactatacaaaggtccaacaatatacagtccagttccacctctaaacagcattattattaat |
218 |
Q |
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| T |
52730302 |
aggaacattgttttgtgttgcaggagcatcagtaattacactatacaaaggtccaacaatatacagtccagttccacctctaaacagcattattattaat |
52730203 |
T |
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| Q |
219 |
ggtggcagtgactcaatctcaatctcatcatcatcactgggattgggagatgcaaaaggaaaaaactggacccttggatgtttgtaccttataggacatt |
318 |
Q |
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| T |
52730202 |
ggtggcagtgagtcaatctcaatttcatcatcatcactgggattgggagatgcaaaaggaaaaaactggacccttggatgtttgtaccttataggacatt |
52730103 |
T |
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| Q |
319 |
gtttgtcatggtctggttggctggtgttgcaagcacctgtccttaagaagtatccggctcgcctctctg |
387 |
Q |
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| T |
52730102 |
gtttgtcatggtctggttggctggtgttgcaagcacctgtccttaagaagtatccggctcgcctctctg |
52730034 |
T |
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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 379
Target Start/End: Complemental strand, 7368972 - 7368860
Alignment:
| Q |
267 |
gatgcaaaaggaaaaaactggacccttggatgtttgtaccttataggacattgtttgtcatggtctggttggctggtgttgcaagcacctgtccttaaga |
366 |
Q |
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| T |
7368972 |
gatgctaagggaaaaaattggacacttggatgtctttatctaattggacattgtttgtcttggtctgcttggcttgtgtttcaagcacctgtccttaaga |
7368873 |
T |
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| Q |
367 |
agtatccggctcg |
379 |
Q |
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| T |
7368872 |
agtaccctgctcg |
7368860 |
T |
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