View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10421_low_6 (Length: 396)
Name: NF10421_low_6
Description: NF10421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10421_low_6 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 4 - 380
Target Start/End: Original strand, 17163 - 17557
Alignment:
| Q |
4 |
tctaactgaattactccatgttaattcatcagcaaagtcataaacttcgtatagacttctaatttgcttgacaattgtaagaaagatccaaatgaatttg |
103 |
Q |
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| T |
17163 |
tctaactgaattactccatgttaattcatcagcaaagtcataaacttcgtatagacttctaatttgcttgacaattgtaagaaagatccaaatgaatttg |
17262 |
T |
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| Q |
104 |
actcagtcagatcaaccaacgcacactaaattacatcgagtatgttgtcgtcacacctcattgacat------------------gctttccaggctcgc |
185 |
Q |
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| T |
17263 |
actcagtcagatcaaccaaagcacactaaattacatcgagtatgtcgtcatcacacgtcattgacattaatattatcagctacatgctttccaggctcgc |
17362 |
T |
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| Q |
186 |
tagtttggcttgtgtattttgcgtgattgttcactgaactatctaagacccgagaagtatgataatgacaattggagttgcggtgtcatcaggacggtta |
285 |
Q |
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| T |
17363 |
tagtttggcttgtctattttgcgtgattgttcactgaactatctaagacccgagaagtatgataatgacaattggagttgcggtgtcatcaggacggtta |
17462 |
T |
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| Q |
286 |
aacttgttattcttgtagcttccttggaagcaagttgttgtcttgttttccggaaactgaggagtaactttaacagtttttccaggttgttgcat |
380 |
Q |
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| T |
17463 |
aacttgttattcttgtagcttccttggaagcaagttgttgtcttgttttcgggaaactgaggagtaactttaacagtttttccagattgttgcat |
17557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 188 - 369
Target Start/End: Complemental strand, 580529 - 580347
Alignment:
| Q |
188 |
gtttggcttgtgtattttgcgtgattgttcactgaactatctaagacccgagaagtatgat-aatgacaattggagttgcggtgtcatcaggacggttaa |
286 |
Q |
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| T |
580529 |
gtttggcctgtgtactttgtgtgattgttcactaaactatctacaacccgagaagtatgattaatgacagttggagttgcggcaacatcaggatggttaa |
580430 |
T |
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| Q |
287 |
acttgttattcttgtagcttccttggaagcaagttgttgtcttgttttccggaaactgaggagtaactttaacagtttttcca |
369 |
Q |
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| T |
580429 |
gcttgttattctcatagcttccttggaaggaagttgttgtcctgttttcatgaaactgaggagtgactttaacagattttcca |
580347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 187 - 374
Target Start/End: Complemental strand, 25798926 - 25798737
Alignment:
| Q |
187 |
agtttggcttgtgtattttgcgtgattgttcactgaactatctaagacccgagaagtatgat--aatgacaattggagttgcggtgtcatcaggacggtt |
284 |
Q |
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||||||||| |||| ||| ||||||||||||| ||||||||| | |||||||||||| ||||||| |||||||||| | | ||||||||||||| |
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| T |
25798926 |
agtttggctcatgtactttttgtgattgttcactaaactatctacacactgagaagtatgatttaatgacagttggagttgcagcgacatcaggacggtt |
25798827 |
T |
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| Q |
285 |
aaacttgttattcttgtagcttccttggaagcaagttgttgtcttgttttccggaaactgaggagtaactttaacagtttttccaggttg |
374 |
Q |
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| T |
25798826 |
aagcttgtcattcgcatagcttccttggaaggaagttgttgtcctgttttcatgaaaccgaggagtgactttaacagattttccacgttg |
25798737 |
T |
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