View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10422_low_1 (Length: 913)
Name: NF10422_low_1
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 807; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 1 - 864
Target Start/End: Complemental strand, 50275904 - 50275037
Alignment:
| Q |
1 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275904 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
50275805 |
T |
|
| Q |
101 |
ttttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcggtt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50275804 |
ttttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcgatt |
50275705 |
T |
|
| Q |
201 |
acatcaagactttat----agaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttacttctttctttgcattt |
296 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275704 |
acatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttacttctttctttgcattt |
50275605 |
T |
|
| Q |
297 |
gttttttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacag |
396 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50275604 |
gtattttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacag |
50275505 |
T |
|
| Q |
397 |
gctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcagagacactttcctccacgtccactggatctggaaatgttgctgagtata |
496 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
50275504 |
gctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcagagacactttcctccacgtccactggatctggaaatgttgttgagtata |
50275405 |
T |
|
| Q |
497 |
tgggtcaaatggctctttcaatggccaagctttccagactggagactttcattcatcaggtaattaattaagacaatgtaatcttgatcactcaacatta |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275404 |
tgggtcaaatggctctttcaatggccaagctttccacactggagactttcattcatcaggtaattaattaagacaatgtaatcttgatcactcaacatta |
50275305 |
T |
|
| Q |
597 |
tcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcggatatcttgaggcaacaaacactgcaacagatgcgtcgaa |
696 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50275304 |
tcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcagatatcttgaggcaacaaacactgcaacagatgcgtcgaa |
50275205 |
T |
|
| Q |
697 |
ttttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatccgagctctgaatttattatggtcagcatttcctaaaga |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
50275204 |
ttttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatcagagctcttaattcattatggtcagcatttcctaaaga |
50275105 |
T |
|
| Q |
797 |
atactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgata |
864 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50275104 |
atactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgata |
50275037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 1 - 864
Target Start/End: Complemental strand, 50279928 - 50279061
Alignment:
| Q |
1 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50279928 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
50279829 |
T |
|
| Q |
101 |
ttttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcggtt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
50279828 |
ttttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcgatt |
50279729 |
T |
|
| Q |
201 |
acatcaagactttat----agaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttacttctttctttgcattt |
296 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50279728 |
acatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttacttctttctttgcattt |
50279629 |
T |
|
| Q |
297 |
gttttttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacag |
396 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50279628 |
gtattttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacag |
50279529 |
T |
|
| Q |
397 |
gctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcagagacactttcctccacgtccactggatctggaaatgttgctgagtata |
496 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
50279528 |
gctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcagagacactttcctccacgtccactggatctggaaatgttgttgagtata |
50279429 |
T |
|
| Q |
497 |
tgggtcaaatggctctttcaatggccaagctttccagactggagactttcattcatcaggtaattaattaagacaatgtaatcttgatcactcaacatta |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50279428 |
tgggtcaaatggctctttcaatggccaagctttccacactggagactttcattcatcaggtaattaattaagacaatgtaatcttgatcactcaacatta |
50279329 |
T |
|
| Q |
597 |
tcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcggatatcttgaggcaacaaacactgcaacagatgcgtcgaa |
696 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279328 |
tcttattccacatttaattgagagtgataacattttgagcattattgtttttcttaggcagatatcttgaggcaacaaacactgcaacagatgcgtcgaa |
50279229 |
T |
|
| Q |
697 |
ttttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatccgagctctgaatttattatggtcagcatttcctaaaga |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
50279228 |
ttttgactgcgcaccaagctgctcgtgctctccttgtcataaatgatttcatttcacgaatcagagctcttaattcattatggtcagcatttcctaaaga |
50279129 |
T |
|
| Q |
797 |
atactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgata |
864 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50279128 |
atactaaaggaattgacacattctatagtgcataactagtgtgtaggcgaataattgacgtattgata |
50279061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 14462579 - 14462668
Alignment:
| Q |
1 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaactt |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14462579 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaactt |
14462668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 22610185 - 22610283
Alignment:
| Q |
2 |
ctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
| |
|
|||||||||||||||| || | |||||||||||||||||| | |||||||| ||| || |||| ||||| ||| |||||||| ||| |||||||||||| |
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|
| T |
22610185 |
ctgatgtatttcacatgctctatgggttgtggaagacaccagtagaaagattttttatttggcatggtgcatttcgttcatctgaaattctcaaggtga |
22610283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 394 - 461
Target Start/End: Original strand, 22610624 - 22610691
Alignment:
| Q |
394 |
caggctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcagagacactttcctc |
461 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||| |||||||||||| ||| ||||||||||| |
|
|
| T |
22610624 |
caggctgaggatgctttatctcacggcatggaagcattgaaacaatctcttttagaaacactttcctc |
22610691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 14931420 - 14931491
Alignment:
| Q |
29 |
tgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
| |
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||||||| |||||||| ||||| |||||| | ||||||||||| || || || || |||||||||||||||| |
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| T |
14931420 |
tgtggaaaacacctgctgaaaggtgtttcttatggcttggtggttttcggtcgtctgaacttctcaaggtga |
14931491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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