View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10422_low_10 (Length: 439)
Name: NF10422_low_10
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 2386903 - 2386494
Alignment:
| Q |
18 |
agataggtctcaaattatcgtgattcggttgccagggtttggatttaatggtacaattcctgctaatacaattagtaaaatcaaagggttgcaaaaattg |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2386903 |
agataggtctcaaattatcgcgattcggttgccagggtttggatttaatggtacaattcctgctaatacaattagtaaaatcaaagggttgcaaaaattg |
2386804 |
T |
|
| Q |
118 |
agccttagatccaacaatatcataggtccattgccagattttgctgtttggaagaatttatctgttgttaatttgtctaataaccgtttcattggtgaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2386803 |
agccttagatccaacaatatcataggtccattgccagattttgctgtttggaagaatttatctgttgttaatttgtctaataaccgtttcattggtgaaa |
2386704 |
T |
|
| Q |
218 |
ttcctttatctctttccaatttgagtcaccttgtttatttgaatctcgcaaacaactcgctttccggtgaaattcctgatataagcttgccattgttgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2386703 |
ttcctttatctctttccaatttgagtcaccttgtttatttgaatctcgcaaacaactcgctttccggtgaaattcctgatataagcttgccattgttgaa |
2386604 |
T |
|
| Q |
318 |
acaattgaatttggctaacaacaatttgcaaggggttgttcctgtttcttttcagaggtttcctaagtcagcatttgttggaaacaatgtttctattggt |
417 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2386603 |
acagttgaatttggctaacaacaatttgcaaggggttgttcctgtttcttttcagaggtttcctaagtcagcatttgttggaaacaatgtttctattggt |
2386504 |
T |
|
| Q |
418 |
acattgtctc |
427 |
Q |
| |
|
|||||||||| |
|
|
| T |
2386503 |
acattgtctc |
2386494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University