View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10422_low_12 (Length: 416)

Name: NF10422_low_12
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10422_low_12
NF10422_low_12
[»] chr1 (8 HSPs)
chr1 (18-406)||(47872344-47872731)
chr1 (70-340)||(33857053-33857318)
chr1 (70-340)||(33923605-33923870)
chr1 (199-357)||(49547316-49547482)
chr1 (355-396)||(49546539-49546580)
chr1 (152-204)||(49444050-49444102)
chr1 (355-397)||(47988494-47988536)
chr1 (304-357)||(44261676-44261730)
[»] chr3 (1 HSPs)
chr3 (253-340)||(14961711-14961801)
[»] chr5 (3 HSPs)
chr5 (358-395)||(31265125-31265162)
chr5 (162-262)||(31264612-31264712)
chr5 (358-406)||(43157546-43157594)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 47872344 - 47872731
Alignment:
Q  18 gttacacttctctgcactttttcatttgcaatatatccgccatgtttctagtttctactatatgccgtaatgccatgatttttggtttgtcgccatccaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47872344 gttacacttctctgcactttttcatttgcaatatatccgccatgtttctagtttctaccatatgccgtaatgccatgatttttggtttgtcgccatccaa 47872443  T
Q  118 cataacattagctctctagttatatatat-agtggcatatttaatttgttcaatctttgttggattaagtgtaatggagtcctaatttagagactaattt 216  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47872444 cataacattagttctctagttatatatataagtggcatatttaatttgttcaatctttgttggattaagtgtaatggagtcctaatttagagactaattt 47872543  T
Q  217 gatgaaattttgcacaattaattgatggattaagtcgtgacactctgcattgttgaagaactacatcgatgatagaaatttgtcatgtaatgaactgatg 316  Q
    ||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47872544 gatgaaattttgcacaat---ttgatggattaagttgtgacactctgcattgttgaagaactacatcgatgatagaaatttgtcatgtaatgaactgatg 47872640  T
Q  317 gagtctatatctttggagtatt-aagtaggggttaggggttctagaataaacatgagttgtggtcctatcatccaccaatatggtcctttg 406  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47872641 gagtctatatctttggagtattaaaataggggttaggggttctagaataaacatgagttgtggtcctatcatccaccaatatggccctttg 47872731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 340
Target Start/End: Original strand, 33857053 - 33857318
Alignment:
Q  70 ttctactatatgccgtaatgccatgatttttggtttgtcgccatccaacataacattagctctctagttatatatatagtggcatatttaatttgttcaa 169  Q
    |||||| |||||| | |||||||||||||||||||||| |||||||| ||||| |||||  ||| |||| ||| |||      | |||||| ||||| ||    
T  33857053 ttctaccatatgctgcaatgccatgatttttggtttgttgccatccaccataatattagtcctccagttgtatgtat-----gacatttaaattgtttaa 33857147  T
Q  170 tctttgttggattaagtgtaatggagtcctaatttagagactaatttgatgaaattttgcacaattaattgatggattaagtcgtgacactctgcattgt 269  Q
    ||||||||||||| ||    | |||||||||||||||||||||||||||| |||        || ||||||||||||||||| ||||||| |||||||||    
T  33857148 tctttgttggattgagacagacggagtcctaatttagagactaatttgattaaa--------aactaattgatggattaagttgtgacacactgcattgt 33857239  T
Q  270 tgaag------aactacatcgatgatagaaatttgtca---tgtaatgaactgatggagtctatatctttggagtattaa 340  Q
    |||||      ||||| || |||||||||| ||| |||     ||||||||||||| |||||||||||||||||||||||    
T  33857240 tgaagaagaaaaacta-attgatgatagaattttttcacacgttaatgaactgatgaagtctatatctttggagtattaa 33857318  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 340
Target Start/End: Complemental strand, 33923870 - 33923605
Alignment:
Q  70 ttctactatatgccgtaatgccatgatttttggtttgtcgccatccaacataacattagctctctagttatatatatagtggcatatttaatttgttcaa 169  Q
    |||||| |||||| | |||||||||||||||||||||| |||||||| ||||| |||||  ||| |||| ||| |||      | |||||| ||||| ||    
T  33923870 ttctaccatatgctgcaatgccatgatttttggtttgttgccatccaccataatattagtcctccagttgtatgtat-----gacatttaaattgtttaa 33923776  T
Q  170 tctttgttggattaagtgtaatggagtcctaatttagagactaatttgatgaaattttgcacaattaattgatggattaagtcgtgacactctgcattgt 269  Q
    ||||||||||||| ||    | |||||||||||||||||||||||||||| |||        || ||||||||||||||||| ||||||| |||||||||    
T  33923775 tctttgttggattgagacagacggagtcctaatttagagactaatttgattaaa--------aactaattgatggattaagttgtgacacactgcattgt 33923684  T
Q  270 tgaag------aactacatcgatgatagaaatttgtca---tgtaatgaactgatggagtctatatctttggagtattaa 340  Q
    |||||      ||||| || |||||||||| ||| |||     ||||||||||||| |||||||||||||||||||||||    
T  33923683 tgaagaagaaaaacta-attgatgatagaattttttcacacgttaatgaactgatgaagtctatatctttggagtattaa 33923605  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 199 - 357
Target Start/End: Complemental strand, 49547482 - 49547316
Alignment:
Q  199 taatttagagactaatttgatgaaattttgcacaattaattgatggattaagtcgtgacactctgcattgttgaagaacta-------catcgatgatag 291  Q
    ||||||||||||||||||||| ||| ||||  ||||||||||||||||||||| | | ||||||||| ||||| |||||||        |  ||||||||    
T  49547482 taatttagagactaatttgatcaaactttgtgcaattaattgatggattaagttgggtcactctgcactgttggagaactaaactgatgagtgatgatag 49547383  T
Q  292 aaatttgtcatgtaatgaactgatggagtctatatctttggagtatt-aagtaggggttaggggttc 357  Q
    || ||| ||| |||||||||| ||| ||| ||||||||||||||||| || |||||||||| |||||    
T  49547382 aattttttcacgtaatgaactaatgtagtttatatctttggagtattaaaataggggttagaggttc 49547316  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 49546580 - 49546539
Alignment:
Q  355 ttctagaataaacatgagttgtggtcctatcatccaccaata 396  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49546580 ttctagaataaacatgagttgtggtcctatcatccaccaata 49546539  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 49444102 - 49444050
Alignment:
Q  152 catatttaatttgttcaatctttgttggattaagtgtaatggagtcctaattt 204  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  49444102 catatttaaattgttcaatttttgttggattgagtgtaatggagtcctaattt 49444050  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 47988536 - 47988494
Alignment:
Q  355 ttctagaataaacatgagttgtggtcctatcatccaccaatat 397  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  47988536 ttctaggataaacatgagttgtgatcctatcatccaccaatat 47988494  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 44261730 - 44261676
Alignment:
Q  304 taatgaactgatggagtctatatctttggagtatt-aagtaggggttaggggttc 357  Q
    ||||| ||||||||||||| ||||||||||| ||| || ||||||||||||||||    
T  44261730 taatggactgatggagtctttatctttggaggattaaaataggggttaggggttc 44261676  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 14961711 - 14961801
Alignment:
Q  253 gtgacactctgcattgttga---agaactacatcgatgatagaaatttgtcatgtaatgaactgatggagtctatatctttggagtattaa 340  Q
    |||| |||||||||||||||   ||||||| || ||||||| | |||| ||||||||| |||||||||| |||| || ||||||| |||||    
T  14961711 gtgatactctgcattgttgaaacagaactaaattgatgatacagatttttcatgtaataaactgatggaatctacatatttggagcattaa 14961801  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 31265125 - 31265162
Alignment:
Q  358 tagaataaacatgagttgtggtcctatcatccaccaat 395  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  31265125 tagaataaacatgaggtgtggtcctatcatctaccaat 31265162  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 31264612 - 31264712
Alignment:
Q  162 ttgttcaatctttgttggattaagtgtaatggagtcctaatttagagactaatttgatgaaattttgcacaattaattgatggattaagtcgtgacactc 261  Q
    ||||||||||||||||||| | ||   ||||||||||||||||  |||||||    ||||| |||| |||||||| || |||||| |||  |||||||||    
T  31264612 ttgttcaatctttgttggaatgagacaaatggagtcctaattttaagactaagccaatgaagttttacacaattagttaatggatcaagctgtgacactc 31264711  T
Q  262 t 262  Q
    |    
T  31264712 t 31264712  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 43157594 - 43157546
Alignment:
Q  358 tagaataaacatgagttgtggtcctatcatccaccaatatggtcctttg 406  Q
    ||||||||||||||| |||| |||||||| |||||||||| | ||||||    
T  43157594 tagaataaacatgaggtgtgttcctatcaaccaccaatattgccctttg 43157546  T

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