View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10422_low_15 (Length: 378)
Name: NF10422_low_15
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 4709040 - 4708668
Alignment:
| Q |
1 |
tcagcattatcgcccattctagatcctactgaactaaaatgatttgataaattttccannnnnnnnattttgtgatgaaggttcttggatagagcagcga |
100 |
Q |
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| T |
4709040 |
tcagcattatcgcccattctagatcctactgaactaaaatgatttgataaattttccattttttttattttgtgatgaaggttcttggatagagcagcga |
4708941 |
T |
|
| Q |
101 |
ttatatcttcaagagatcatgataaccagaaaggcgcctgttccaacacatggcgtctctgtcctgtaagtcaagttgaagaagtgaagtgcatactgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4708940 |
ttatatcttcaagagatcatgataaccagaaaggcacctgttccaacccatggcgtctctgtcctgtaagtcaagttgaagaagtgaagtgcatactgag |
4708841 |
T |
|
| Q |
201 |
actccttccgatttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatgccatgaaaaccactgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4708840 |
actccttccgatttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatgccatgaaaaccactgtt |
4708741 |
T |
|
| Q |
301 |
tacaatttcagagtaccaccagctagcatgtcttgctttgatatcatcagcgtagctgtttttattttcttct |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4708740 |
tacaatttcagagtaccaccagctagcatgtcttgctttgatatcatcagcgtagctgtttttattttcttct |
4708668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 171 - 373
Target Start/End: Original strand, 40743733 - 40743935
Alignment:
| Q |
171 |
tcaagttgaagaagtgaagtgcatactgagactccttccgatttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtg |
270 |
Q |
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||||||||||||||| || |||||||| ||||| ||||| |||||||| ||||| ||||| ||||| || |||||||| || |||||||| ||||||||| |
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| T |
40743733 |
tcaagttgaagaagtaaaatgcatactaagacttcttccaatttggctttgcacaataatctactcagtagttttcactcagatggcttccctttttgtg |
40743832 |
T |
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| Q |
271 |
gagcaaggtgatgccatgaaaaccactgtttacaatttcagagtaccaccagctagcatgtcttgctttgatatcatcagcgtagctgtttttattttct |
370 |
Q |
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|||||||||| ||| ||||||||||| ||| || ||||| | |||||||||| ||||||||| |||| |||||| |||||||||| | || ||||||| |
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| T |
40743833 |
gagcaaggtgctgcaatgaaaaccacaatttccagtttcaaaataccaccagcaagcatgtctagcttcgatatcctcagcgtagccatcttcattttct |
40743932 |
T |
|
| Q |
371 |
tct |
373 |
Q |
| |
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||| |
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|
| T |
40743933 |
tct |
40743935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 397423 - 397494
Alignment:
| Q |
212 |
tttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatg |
283 |
Q |
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||||||| ||||| || || |||||||| || |||||||||||||||||||||||||| || |||||||||| |
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| T |
397423 |
tttggctgtgcactattatttactctgttgtattcacacaaatggcttctctttttgtcgaacaaggtgatg |
397494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 3803361 - 3803283
Alignment:
| Q |
212 |
tttggctctgcaccataatatactctgtggttttcacacaaatggcttctctttttgtggagcaaggtgatgccatgaa |
290 |
Q |
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||||||| ||||| || || |||||||| || || ||||||||||||||||||||||| || ||||| ||||| ||||| |
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| T |
3803361 |
tttggctatgcactattatttactctgttgtatttacacaaatggcttctctttttgtcgaacaaggcgatgcaatgaa |
3803283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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