View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10422_low_16 (Length: 352)
Name: NF10422_low_16
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 48912568 - 48912894
Alignment:
| Q |
17 |
aggtagaaggtagaagccgtttcgtttagctttgctataaatgaaagaaaatgacataggtagccatcacagtacttggtttagacattttatcaaacac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912568 |
aggtagaaggtagaagccgtttcgtttagctttgctataaatgaaagaaaatgacataggtagccatcacagtacttggtttagacattttatcaaacac |
48912667 |
T |
|
| Q |
117 |
ctaacatactattttaagcacatattcagtaaaaaatgaaatatatatgaatttaaaaattgagcaattagctatttatttatgctattgaacaagggat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912668 |
ctaacatactattttaagcacatattcagtaaaaaatgaagtatatatgaatttaaaaattgagcaattagctatttatttatgctattgaacaagggat |
48912767 |
T |
|
| Q |
217 |
ttgtataacaatgttgttctaaaagtaatgaacccagcaatacatacacgaatttatgtgctgaaatgtgaagtgatagcttctaattaccaaccacaag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48912768 |
ttgtataacaatgttgttctaaaagtaatgaacccagcaatacatacacgaatttatgtgctgaaatgtgaagtgatagcttctaattaccaaccacaag |
48912867 |
T |
|
| Q |
317 |
taacattctatttctaatctgtgctcc |
343 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
48912868 |
taacattctatttctaatttgtgctcc |
48912894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 48923988 - 48924053
Alignment:
| Q |
28 |
agaagccgtttcgtttagctttgctataaatgaaagaaaatgacataggtagccatcacagtactt |
93 |
Q |
| |
|
|||||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
48923988 |
agaagctgttttgtttagctttgctgcaaatgaaagaaaatgacataggcagccatcacagaactt |
48924053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 125
Target Start/End: Original strand, 48924222 - 48924250
Alignment:
| Q |
97 |
ttagacattttatcaaacacctaacatac |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
48924222 |
ttagacattttatcaaacacctaacatac |
48924250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 55424990 - 55424955
Alignment:
| Q |
40 |
gtttagctttgctataaatgaaagaaaatgacatag |
75 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
55424990 |
gtttagctttgctacaaatgaaagaaaatgacatag |
55424955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University