View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10422_low_17 (Length: 339)
Name: NF10422_low_17
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 48111051 - 48111358
Alignment:
| Q |
12 |
caaaggaaataaacatatgaatttacaacaaacaaccgtctcattaaaaatctttacctaaaaaattaagtgggataaaattggaagcatctcaacatga |
111 |
Q |
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| T |
48111051 |
caaaggaaataaacatatgaatttacaacaaacaaccgtctcattaaaaatctttacctaaaaaattaagtgggataaaattggaagcatctcaacatga |
48111150 |
T |
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| Q |
112 |
ggagtggagagaatcttcaactaattgtggagggaggaacccatcataaaatcaacactttaatcaccctctcgaagtatctcacttttgtttgagtaag |
211 |
Q |
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| T |
48111151 |
ggagtggagagaatcttcaactaattgtggagggaggaacccatcataaaatcaacactttaatcacc--ctcgaaatatctcacttttgtttgagtaag |
48111248 |
T |
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| Q |
212 |
cgtcaaaattaaagcattggttatattgatttctatagatttattgacttaatgaagcaatgagaaaacacatgatgatttacacgtgattaatttggca |
311 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48111249 |
cgtcaaaattaaagcattggttatattggtttctatagatttattgacttaatgaagcaatgagaaaacacatgatgatttacacgtgattaatttggca |
48111348 |
T |
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| Q |
312 |
ccataatcct |
321 |
Q |
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|||||||||| |
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| T |
48111349 |
ccataatcct |
48111358 |
T |
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