View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10422_low_19 (Length: 319)
Name: NF10422_low_19
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 39998116 - 39998427
Alignment:
| Q |
1 |
ggccctcaatttccttgtaagtaataagtagagattattttgattggcttatagcaatgatgttccttttgttttaccattaatcatcttttgtatttcc |
100 |
Q |
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| T |
39998116 |
ggccctcaatttccttgtaagtaataagtagagattattttgattggcttatagcaatgatgttccttttgttttaccattaatcatcttttgtatttcc |
39998215 |
T |
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| Q |
101 |
aataaccatgggtcctttttatgtgattggcgtgattaaaggatgtgaagaatgatttgttggatattacagtttcattggtttaccaaaactattacta |
200 |
Q |
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| T |
39998216 |
aataaccatgggtcctttttatgtgattggcgtgattaaaggatgtgaagaatgatttgttggatattacagtttcattggtttaccaaaactattac-- |
39998313 |
T |
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| Q |
201 |
ataccattttgtcctatatagcaatttggatcctatgcaagttgcatcctgtcttcttttgaagacaccat----gctggctgagattgtcttttttcat |
296 |
Q |
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| T |
39998314 |
-tatcattttgtcctatatagcaatttgaatcctatgtaagttgcatcctgtcttcttttgaagacaccatgctggctggctgagattgtcttttttcat |
39998412 |
T |
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| Q |
297 |
ggtcatattcatctc |
311 |
Q |
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| T |
39998413 |
ggtcatattcatctc |
39998427 |
T |
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