View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10422_low_2 (Length: 624)
Name: NF10422_low_2
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 602
Target Start/End: Complemental strand, 52423372 - 52422771
Alignment:
| Q |
1 |
ccttcgaaataagagatagaaacaatctcccaataaagtagaaatcaaacacaccagcctgcaaagaaccaacagcgctgcactttattggagatttagg |
100 |
Q |
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| T |
52423372 |
ccttcgaaataagagatagaaacaatctcccaataaagtagaaatcaaacacaccagcctgcaaagaaccaacagcgctgcactttattggagatttagg |
52423273 |
T |
|
| Q |
101 |
nnnnnnncactgacttggaaacttgtaatctaaggaactggaatagatgctaatctctatcaattttataataatttaactgatcaatgattatgttgtc |
200 |
Q |
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| T |
52423272 |
tttttttcactgacttggaaacttgtaatctaaggaactggaatagatgctaatctctatcaattttataataatttaaatgatcaatgattatgttgtc |
52423173 |
T |
|
| Q |
201 |
atcttctattcaaagaattggaagaagttgctctactcagacctacccagtatgatagaaaacttgaaacaaacttgcatttgaatagattggttattag |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423172 |
atcttctattcacagaattggaagaagttgctctactcagacctacccagtatgatagaaaacttgaaacaaacttgcatttgaatagattggttattag |
52423073 |
T |
|
| Q |
301 |
acctaagaggttggtgattaaattcgacccaatttttcgcattattaagaatttaaacaaaagcactcgtgggaacacataatattggatttctgttgta |
400 |
Q |
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| T |
52423072 |
acctaagaggttggtgattaaattcgacccaatttttcgcattattaagaatttaaacaaaagcactcgtgggaacacataatattggatttctgttgta |
52422973 |
T |
|
| Q |
401 |
atttagaattgaacatgcagtgtctcccaatataagtaacttgcattataaatgataactaacgttttttctttcctgtattattgaaggagtcaaatct |
500 |
Q |
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| T |
52422972 |
atttagaattgaatatgcagtgtctcccaatataagtaacttgccttataaatgataactaacgttttttctttcctgtattattgaaggagtcaaatct |
52422873 |
T |
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| Q |
501 |
taaatcaatgtaatgatcactacaccaaaatattgttaaataaactcaaaagcttgtcactatttctcacgttttgatttattaaaacaacatatttcct |
600 |
Q |
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| T |
52422872 |
taaatcaatgtaatgatcactacaccaaaatattgttaaataaactcaaaagcttgtcactatttctcacgttttgatttattaaaacaacatatttcct |
52422773 |
T |
|
| Q |
601 |
ag |
602 |
Q |
| |
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|| |
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| T |
52422772 |
ag |
52422771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 112 - 336
Target Start/End: Complemental strand, 42716166 - 42715940
Alignment:
| Q |
112 |
gacttggaaacttgtaatctaaggaactgga-atagatgctaatctctatcaattttataataatttaactgatcaatgattatgttgtcatcttctatt |
210 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||| || ||||||| |||||| | ||| |||||||||||||| | ||||||||||| |
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| T |
42716166 |
gacttggaaacttgtaatctaaggaattggagatagatgctaatcagtagcaattttttaataaatgaacagatcaatgattatgctttcatcttctata |
42716067 |
T |
|
| Q |
211 |
caaagaat-tggaagaagttgctctactcagacctaccc-agtatgatagaaaacttgaaacaaacttgcatttgaatagattggttattagacctaaga |
308 |
Q |
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|||| || || |||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42716066 |
caaaaaaactgtaagaagtttctctactcagacctaccccagtatgatagagaacttgaaacaaacttgcttttgaatagattggttattagacctaaga |
42715967 |
T |
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| Q |
309 |
ggttggtgattaaattcgacccaatttt |
336 |
Q |
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| T |
42715966 |
ggttggtgattaaatt-gacccaatttt |
42715940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 420 - 456
Target Start/End: Complemental strand, 42715529 - 42715493
Alignment:
| Q |
420 |
gtgtctcccaatataagtaacttgcattataaatgat |
456 |
Q |
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| T |
42715529 |
gtgtctcccaatataagtaatttgcattataaatgat |
42715493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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