View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10422_low_20 (Length: 309)

Name: NF10422_low_20
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10422_low_20
NF10422_low_20
[»] chr8 (5 HSPs)
chr8 (186-303)||(26125254-26125371)
chr8 (24-83)||(26125477-26125537)
chr8 (35-79)||(30085784-30085828)
chr8 (35-79)||(40742448-40742492)
chr8 (189-246)||(40742622-40742677)
[»] chr3 (7 HSPs)
chr3 (189-306)||(35930383-35930502)
chr3 (26-79)||(35930640-35930693)
chr3 (35-68)||(3348130-3348163)
chr3 (30-79)||(14959621-14959670)
chr3 (1-38)||(40933882-40933919)
chr3 (30-66)||(31084123-31084159)
chr3 (30-66)||(52966959-52966995)
[»] chr4 (5 HSPs)
chr4 (189-264)||(56242163-56242238)
chr4 (26-79)||(56241981-56242034)
chr4 (35-68)||(46830250-46830283)
chr4 (31-65)||(28986895-28986929)
chr4 (30-66)||(4954201-4954237)
[»] chr6 (3 HSPs)
chr6 (189-283)||(33899305-33899400)
chr6 (189-283)||(33899455-33899550)
chr6 (26-79)||(33899151-33899204)
[»] chr2 (3 HSPs)
chr2 (216-281)||(2212510-2212576)
chr2 (30-70)||(2212741-2212781)
chr2 (30-79)||(28641551-28641602)
[»] chr1 (3 HSPs)
chr1 (35-68)||(31933638-31933671)
chr1 (35-68)||(42850401-42850434)
chr1 (30-66)||(5410579-5410615)
[»] chr7 (2 HSPs)
chr7 (30-66)||(3375426-3375462)
chr7 (30-79)||(9456024-9456077)
[»] chr5 (1 HSPs)
chr5 (1-45)||(41179854-41179898)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 186 - 303
Target Start/End: Complemental strand, 26125371 - 26125254
Alignment:
Q  186 aagtaagaagtctctagaacttcgcctttaattaataaataacaaatataatgatgggtaattgaagtcatttatgaagaagactccagactctctctat 285  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26125371 aagtaagaattctctagaacttctcctttaattaataaataacaaatataatgatgggtaattgaagtcatttatgaagaagactccagactctctctct 26125272  T
Q  286 gtaatatactacccattt 303  Q
    |||||||  |||||||||    
T  26125271 gtaatattttacccattt 26125254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 26125537 - 26125477
Alignment:
Q  24 cgaaaatatctttttaattgtatttaaaatt-aaatatctcattttatataattattcaag 83  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26125537 cgaaaatatctttttaattgtatttaaaattaaaatatctcattttatataattattcaag 26125477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 30085784 - 30085828
Alignment:
Q  35 ttttaattgtatttaaaattaaatatctcattttatataattatt 79  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||    
T  30085784 ttttaattgtgtttaaaattaaatatttcattttatataattatt 30085828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 40742448 - 40742492
Alignment:
Q  35 ttttaattgtatttaaaattaaatatctcattttatataattatt 79  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||    
T  40742448 ttttaattgtgtttaaaattaaatatttcattttatataattatt 40742492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 40742622 - 40742677
Alignment:
Q  189 taagaagtctctagaacttcgcctttaattaataaataacaaatataatgatgggtaa 246  Q
    |||||| ||||||||||||| |  ||||||||||||||||||||||| ||||||||||    
T  40742622 taagaattctctagaacttctc--ttaattaataaataacaaatatagtgatgggtaa 40742677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 189 - 306
Target Start/End: Complemental strand, 35930502 - 35930383
Alignment:
Q  189 taagaagtctctagaacttcgcctttaattaataaataacaaatataatgatgggtaattgaagtcatttatgaagaagactccagactctctc--tatg 286  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||    
T  35930502 taagaattctctagaacttctcctttaattaataaataacaaatataatgatgggtaattgaagtcatttatgaagaagactccagactctctctgtgtg 35930403  T
Q  287 taatatactacccatttcat 306  Q
    ||||||||||| ||||||||    
T  35930402 taatatactacgcatttcat 35930383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 35930693 - 35930640
Alignment:
Q  26 aaaatatctttttaattgtatttaaaattaaatatctcattttatataattatt 79  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35930693 aaaatatcattttaattgtatttaaaattaaatatctcattttatataattatt 35930640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 3348163 - 3348130
Alignment:
Q  35 ttttaattgtatttaaaattaaatatctcatttt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  3348163 ttttaattgtatttaaaattaaatatctcatttt 3348130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 14959670 - 14959621
Alignment:
Q  30 tatctttttaattgtatttaaaattaaatatctcattttatataattatt 79  Q
    ||||||||||||||||||||||||||||||  |||||||| || ||||||    
T  14959670 tatctttttaattgtatttaaaattaaatagttcattttagatgattatt 14959621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40933882 - 40933919
Alignment:
Q  1 aactgagctaagctcacggggatcgaaaatatcttttt 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  40933882 aactgagctaagctcacggggataaaaaatatcttttt 40933919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 31084159 - 31084123
Alignment:
Q  30 tatctttttaattgtatttaaaattaaatatctcatt 66  Q
    |||| |||||||||||||||||| |||||||||||||    
T  31084159 tatcattttaattgtatttaaaagtaaatatctcatt 31084123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 52966959 - 52966995
Alignment:
Q  30 tatctttttaattgtatttaaaattaaatatctcatt 66  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  52966959 tatccttttaattgtatttaaaattatatatctcatt 52966995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 56242163 - 56242238
Alignment:
Q  189 taagaagtctctagaacttcgcctttaattaataaataacaaatataatgatgggtaattgaagtcatttatgaag 264  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56242163 taagaattctctagaacttctcctttaattaataaataacaaatataatgatgggtaattgaagtcatttatgaag 56242238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 56241981 - 56242034
Alignment:
Q  26 aaaatatctttttaattgtatttaaaattaaatatctcattttatataattatt 79  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  56241981 aaaatatccttttaattgtatttaaaattaaatatctcattttatataattatt 56242034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 46830250 - 46830283
Alignment:
Q  35 ttttaattgtatttaaaattaaatatctcatttt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  46830250 ttttaattgtatttaaaattaaatatctcatttt 46830283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 28986929 - 28986895
Alignment:
Q  31 atctttttaattgtatttaaaattaaatatctcat 65  Q
    |||||||||||||||||||||| ||||||||||||    
T  28986929 atctttttaattgtatttaaaactaaatatctcat 28986895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 4954201 - 4954237
Alignment:
Q  30 tatctttttaattgtatttaaaattaaatatctcatt 66  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  4954201 tatccttttaattgtatttaaaattatatatctcatt 4954237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 33899305 - 33899400
Alignment:
Q  189 taagaagtctctagaacttcgcctttaattaa-taaataacaaatataatgatgggtaattgaagtcatttatgaagaagactccagactctctct 283  Q
    |||||| ||||| ||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||  ||||||||    
T  33899305 taagaattctctggaatttctcctttaattaaataaataacaaatataatgatggataattgaagtcatttatgaggaagactccatgctctctct 33899400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 33899455 - 33899550
Alignment:
Q  189 taagaagtctctagaacttcgcctttaattaa-taaataacaaatataatgatgggtaattgaagtcatttatgaagaagactccagactctctct 283  Q
    |||||| ||||| ||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||  ||||||||    
T  33899455 taagaattctctggaatttctcctttaattaaataaataacaaatataatgatggataattgaagtcatttatgaggaagactccattctctctct 33899550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 33899151 - 33899204
Alignment:
Q  26 aaaatatctttttaattgtatttaaaattaaatatctcattttatataattatt 79  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33899151 aaaatatccttttaattgtatttaaaattaaatatctcattttatataattatt 33899204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 2212576 - 2212510
Alignment:
Q  216 attaataaataacaaatataatgatgggtaattgaagtcattt-atgaagaagactccagactctct 281  Q
    |||||||| ||| ||||||| ||||| ||||||||| |||||| ||||||||||||| |||||||||    
T  2212576 attaataagtaataaatatactgatgtgtaattgaattcattttatgaagaagactctagactctct 2212510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 2212781 - 2212741
Alignment:
Q  30 tatctttttaattgtatttaaaattaaatatctcattttat 70  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  2212781 tatccttttaattttatttaaaattaaatatctcattttat 2212741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 28641602 - 28641551
Alignment:
Q  30 tatctttttaattgtatttaaaattaaata--tctcattttatataattatt 79  Q
    |||| ||||||||||||||||||||| |||  |||||||||| |||||||||    
T  28641602 tatccttttaattgtatttaaaattagatatctctcattttagataattatt 28641551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 31933671 - 31933638
Alignment:
Q  35 ttttaattgtatttaaaattaaatatctcatttt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  31933671 ttttaattgtatttaaaattaaatatctcatttt 31933638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 42850401 - 42850434
Alignment:
Q  35 ttttaattgtatttaaaattaaatatctcatttt 68  Q
    ||||||||||||||||||||||||||||||||||    
T  42850401 ttttaattgtatttaaaattaaatatctcatttt 42850434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 5410615 - 5410579
Alignment:
Q  30 tatctttttaattgtatttaaaattaaatatctcatt 66  Q
    |||| |||||||||||||||||| |||||||||||||    
T  5410615 tatccttttaattgtatttaaaagtaaatatctcatt 5410579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 3375462 - 3375426
Alignment:
Q  30 tatctttttaattgtatttaaaattaaatatctcatt 66  Q
    |||| ||||||||||||||||||||||||||||||||    
T  3375462 tatccttttaattgtatttaaaattaaatatctcatt 3375426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 9456077 - 9456024
Alignment:
Q  30 tatctttttaattgtatttaaaattaaatatc----tcattttatataattatt 79  Q
    ||||||||||||||||||||||| ||||||||    |||||||| |||||||||    
T  9456077 tatctttttaattgtatttaaaactaaatatcattttcattttagataattatt 9456024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41179854 - 41179898
Alignment:
Q  1 aactgagctaagctcacggggatcgaaaatatctttttaattgta 45  Q
    ||||||||||||||||||||||| ||||||  ||| |||||||||    
T  41179854 aactgagctaagctcacggggatggaaaatcacttattaattgta 41179898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University