View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10422_low_21 (Length: 305)

Name: NF10422_low_21
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10422_low_21
NF10422_low_21
[»] chr6 (13 HSPs)
chr6 (11-292)||(33057158-33057439)
chr6 (143-280)||(33644699-33644836)
chr6 (159-285)||(33285322-33285448)
chr6 (162-292)||(33262357-33262487)
chr6 (152-292)||(33387875-33388015)
chr6 (161-292)||(33304214-33304345)
chr6 (162-285)||(28870323-28870446)
chr6 (159-292)||(9166489-9166622)
chr6 (154-280)||(31562983-31563109)
chr6 (218-280)||(33271582-33271644)
chr6 (187-292)||(33398828-33398933)
chr6 (154-213)||(33358656-33358715)
chr6 (162-280)||(33409709-33409827)
[»] scaffold1408 (1 HSPs)
scaffold1408 (154-292)||(367-505)
[»] scaffold0428 (1 HSPs)
scaffold0428 (154-292)||(6113-6251)
[»] chr2 (1 HSPs)
chr2 (154-285)||(17441022-17441147)
[»] chr4 (5 HSPs)
chr4 (154-285)||(31499209-31499340)
chr4 (162-285)||(31472704-31472827)
chr4 (162-292)||(31479155-31479285)
chr4 (242-292)||(31148108-31148158)
chr4 (159-290)||(31156951-31157082)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 33057158 - 33057439
Alignment:
Q  11 cataggtgacttgatttggtggtaacaagactgagatttactggaactctcatattcaacaacctctcattggaatcaatacgcttgaaagccagataca 110  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  33057158 cataggtgacttgatttggtcgtaacaagactgagctttactggaactctcattttcaacaacctctcattggaatcaatacgcttgaaagccagattca 33057257  T
Q  111 tcaacttcgacgaacaaaaactttcacgatagggtgccgtcgtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaatagg 210  Q
    |||||| ||| ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057258 tcaactccgaggaataaaaaatttcacgatagggtgccatcgtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaatagg 33057357  T
Q  211 agaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttga 292  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33057358 agatcggtctattgctattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaactatttga 33057439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 143 - 280
Target Start/End: Complemental strand, 33644836 - 33644699
Alignment:
Q  143 ggtgccgtcgtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcc 242  Q
    |||||| | |||||| |||||||||||||||  |||||||||||||||| |||||||||| ||||||||||   ||||||| |||||||||||||||  |    
T  33644836 ggtgccatggtaaatactgcacaacatacaaatccaatgatattattgttattgtcatgcataataggagattcgtctatttgtattgaataacccacac 33644737  T
Q  243 tctgattgttgatccaacttggtatttcacttcctgga 280  Q
    | ||||||||||||||||||||||||||||||||||||    
T  33644736 tttgattgttgatccaacttggtatttcacttcctgga 33644699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 159 - 285
Target Start/End: Original strand, 33285322 - 33285448
Alignment:
Q  159 ctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatcca 258  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||||||| | ||||||||||||||||  |||||  |||||||| || |||||    
T  33285322 ctgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagatctgtctattggtattgaactacccacgctctgattattaatcca 33285421  T
Q  259 acttggtatttcacttcctggattaac 285  Q
    |||||||||||||||||||||| ||||    
T  33285422 acttggtatttcacttcctggagtaac 33285448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 162 - 292
Target Start/End: Original strand, 33262357 - 33262487
Alignment:
Q  162 cacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaact 261  Q
    ||||||||| ||  |||||||||||||||| ||| |||||| |||||||||   |||||| ||||||||||| |||||| ||||||||||||||||||||    
T  33262357 cacaacatagaaagccaatgatattattgttattatcatgcataataggagtttggtctactggtattgaatcacccatgctctgattgttgatccaact 33262456  T
Q  262 tggtatttcacttcctggattaactatttga 292  Q
    |||||||||| |||||||| |||| ||||||    
T  33262457 tggtatttcatttcctggactaacaatttga 33262487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 152 - 292
Target Start/End: Original strand, 33387875 - 33388015
Alignment:
Q  152 gtaaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgt 251  Q
    |||||| |||||||||||| ||  |||||||||||||||| |||||||||| |||||||  |   ||||||| ||||||||| |||||| ||||||||||    
T  33387875 gtaaatactgcacaacatagaaagccaatgatattattgttattgtcatgcataataggcaatttgtctattagtattgaatcacccatgctctgattgt 33387974  T
Q  252 tgatccaacttggtatttcacttcctggattaactatttga 292  Q
    |||||||||| |||||||||||||||| | |||| ||||||    
T  33387975 tgatccaactcggtatttcacttcctgtagtaacaatttga 33388015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 33304214 - 33304345
Alignment:
Q  161 gcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaac 260  Q
    |||||||||| ||  |||||||||| ||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||  |||| |||||||||||||     
T  33304214 gcacaacatagaaagccaatgatataattgttattgtcatgcataataggagatcggtctatttgtattgaatcacccacgctcttattgttgatccaaa 33304313  T
Q  261 ttggtatttcacttcctggattaactatttga 292  Q
    ||||||||||| |||||||| |||| ||||||    
T  33304314 ttggtatttcatttcctggagtaacaatttga 33304345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 28870446 - 28870323
Alignment:
Q  162 cacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaact 261  Q
    ||||||||||||  |||||||||||||||| ||||||||   ||||||||||   ||||||| ||||||||  |||||| ||||||||||| ||||||||    
T  28870446 cacaacatacaaagccaatgatattattgttattgtcatttataataggagattcgtctatttgtattgaaccacccatgctctgattgttaatccaact 28870347  T
Q  262 tggtatttcacttcctggattaac 285  Q
    ||||||||||||||||||| ||||    
T  28870346 tggtatttcacttcctggagtaac 28870323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 159 - 292
Target Start/End: Original strand, 9166489 - 9166622
Alignment:
Q  159 ctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatcca 258  Q
    |||||||||||||||  |||||||||||||||| |||||||||| |||||||||   ||||||||||||| |||  | |||  ||| |||||||||||||    
T  9166489 ctgcacaacatacaaagccaatgatattattgttattgtcatgcataataggagttaggtctattggtatcgaaccatccacgctccgattgttgatcca 9166588  T
Q  259 acttggtatttcacttcctggattaactatttga 292  Q
    ||||||||||||| |||||||  |||| ||||||    
T  9166589 acttggtatttcaattcctggcgtaacaatttga 9166622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 31563109 - 31562983
Alignment:
Q  154 aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttg 253  Q
    |||| |||||||||||||||  |||||||||| ||||  |||||||||| ||  ||||||    |||||||||||||||| |||||| || |||||||||    
T  31563109 aaatactgcacaacatacaaagccaatgatatcattgatattgtcatgcataggaggagagaactctattggtattgaatcacccatgctatgattgttg 31563010  T
Q  254 atccaacttggtatttcacttcctgga 280  Q
    |||||| | ||||||||||||||||||    
T  31563009 atccaattcggtatttcacttcctgga 31562983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 33271582 - 33271644
Alignment:
Q  218 tctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctgga 280  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  33271582 tctattggtatcgaatcacccatgctctgattgttgatccaacttggtatttcacttcctgga 33271644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 33398828 - 33398933
Alignment:
Q  187 attgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaacttggtatttcacttcctggattaact 286  Q
    ||||| ||| |||||| ||  ||||||  |||||||| ||||||||| |||||  | ||||||||||||||||||||||||||||||||||||| ||||     
T  33398828 attgttattatcatgcatagcaggagataggtctatttgtattgaatcacccacacactgattgttgatccaacttggtatttcacttcctggaataaca 33398927  T
Q  287 atttga 292  Q
    ||||||    
T  33398928 atttga 33398933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 33358656 - 33358715
Alignment:
Q  154 aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggaga 213  Q
    |||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  33358656 aaatactgcacaacatacaaaaccaatgacattattgttattgtcatgcctaataggaga 33358715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 33409709 - 33409827
Alignment:
Q  162 cacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaact 261  Q
    |||||| |||||  ||||| |||||||||| ||||||||   ||| ||||||    || |||| |||||||  |||||  ||||||||||||||||||||    
T  33409709 cacaacttacaaagccaataatattattgttattgtcatttataacaggagattcatcaattgatattgaagcacccacgctctgattgttgatccaact 33409808  T
Q  262 tggtatttcacttcctgga 280  Q
    |||||||||||||||||||    
T  33409809 tggtatttcacttcctgga 33409827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 292
Target Start/End: Original strand, 367 - 505
Alignment:
Q  154 aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttg 253  Q
    |||| |||||||| ||||||  |||||||||||||| | |||||||||  ||| ||||||   ||||||| ||||||||  |||||| ||||||||||||    
T  367 aaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttg 466  T
Q  254 atccaacttggtatttcacttcctggattaactatttga 292  Q
    ||||| ||||||||||||||||||||| |||| ||||||    
T  467 atccagcttggtatttcacttcctggagtaacaatttga 505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 292
Target Start/End: Original strand, 6113 - 6251
Alignment:
Q  154 aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttg 253  Q
    |||| |||||||| ||||||  |||||||||||||| | |||||||||  ||| ||||||   ||||||| ||||||||  |||||| ||||||||||||    
T  6113 aaatactgcacaaaatacaaagccaatgatattattcttattgtcatgtataacaggagattcgtctattagtattgaaccacccatgctctgattgttg 6212  T
Q  254 atccaacttggtatttcacttcctggattaactatttga 292  Q
    ||||| ||||||||||||||||||||| |||| ||||||    
T  6213 atccagcttggtatttcacttcctggagtaacaatttga 6251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 154 - 285
Target Start/End: Complemental strand, 17441147 - 17441022
Alignment:
Q  154 aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttg 253  Q
    |||| ||||||||||||||| ||||||||||||||||||||      || ||||||||||  ||||||||  |||||||| |||||  |||| |||||||    
T  17441147 aaatactgcacaacatacaaaaccaatgatattattgtcat------gcttaataggagattggtctattcttattgaatcacccacgctcttattgttg 17441054  T
Q  254 atccaacttggtatttcacttcctggattaac 285  Q
    ||||||||||||||||| ||||||||| ||||    
T  17441053 atccaacttggtatttcgcttcctggactaac 17441022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 285
Target Start/End: Complemental strand, 31499340 - 31499209
Alignment:
Q  154 aaatgctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttg 253  Q
    |||| |||||||||||||||  |||||||||||||||| |||||||||  |||| |||||   ||||||| ||||||||| |||| | |||||||| ||     
T  31499340 aaatactgcacaacatacaaagccaatgatattattgttattgtcatggataatgggagatgagtctattcgtattgaatcacccttgctctgattctta 31499241  T
Q  254 atccaacttggtatttcacttcctggattaac 285  Q
    | |||||||| |||||||||||||||| ||||    
T  31499240 aaccaacttgatatttcacttcctggagtaac 31499209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 31472827 - 31472704
Alignment:
Q  162 cacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaact 261  Q
    ||||||||| |  ||||||||||||||||| |||||||||| |||| |||||   ||||| | |||| |||| |||| |  |||||||||||| ||||||    
T  31472827 cacaacatatacaaccaatgatattattgttattgtcatgcataatgggagatgagtctaatcgtatcgaatcacccttgttctgattgttgaaccaact 31472728  T
Q  262 tggtatttcacttcctggattaac 285  Q
    ||||||||||||||||||| ||||    
T  31472727 tggtatttcacttcctggagtaac 31472704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 31479285 - 31479155
Alignment:
Q  162 cacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatccaact 261  Q
    |||||||||||   |||| ||||||||||| |||||| ||| |||| |||||    |||||| ||||| ||| |||| | ||||||||||||| ||||||    
T  31479285 cacaacatacacagccaacgatattattgttattgtcgtgcataatcggagaagaatctattcgtattaaattacccttgctctgattgttgaaccaact 31479186  T
Q  262 tggtatttcacttcctggattaactatttga 292  Q
    ||| |||||||| |||||| |||| ||||||    
T  31479185 tggcatttcactacctggagtaacaatttga 31479155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 31148108 - 31148158
Alignment:
Q  242 ctctgattgttgatccaacttggtatttcacttcctggattaactatttga 292  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||| ||||||    
T  31148108 ctctgattgttgaaccaacttggtatttcacttcccggagtaacaatttga 31148158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 290
Target Start/End: Original strand, 31156951 - 31157082
Alignment:
Q  159 ctgcacaacatacaataccaatgatattattgtcattgtcatgcctaataggagaccggtctattggtattgaataacccatcctctgattgttgatcca 258  Q
    ||||||||||  |||| ||||||| || |||||||||||  | | ||||  ||||  |||| |||  |||||||| ||||   ||||||||||||| |||    
T  31156951 ctgcacaacaagcaatgccaatgaaatcattgtcattgttgtccataatctgagataggtccattcttattgaatcaccctcgctctgattgttgaacca 31157050  T
Q  259 acttggtatttcacttcctggattaactattt 290  Q
    | |||||||||||||||| ||| |||| ||||    
T  31157051 aattggtatttcacttccaggaataacaattt 31157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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