View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10422_low_24 (Length: 290)
Name: NF10422_low_24
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 35350028 - 35349770
Alignment:
| Q |
18 |
gctaactaccttatttacctgaacttgacagcttgtttgattaagcaaagatgttttatgttatgaagatttgtctgtatgcattggaccatatgtaact |
117 |
Q |
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| T |
35350028 |
gctaactaccttatttacctgaacttgacagcttgtttgattaagcaaagatgttttatgttatgaagatttgtctgtatgcattggaccatatgtaact |
35349929 |
T |
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| Q |
118 |
taaaaaatacttgcaaggttcacaccacaacacgtaaaagttatgcaatcattttaaatcgcccctacctcctacataaaccatagaaacccaagaacca |
217 |
Q |
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| T |
35349928 |
taaaaaatacttgcaagtttcacaccacaacacgtaaaagttatgcaatcattttaaattgcccctacatcctacataaaccatagaaacccaagaacca |
35349829 |
T |
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| Q |
218 |
acagggacgttgaaaaagtccttgagggcgtgccaacctgttgtgaggtaaatccggcc |
276 |
Q |
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| T |
35349828 |
acagggacgttgaaaaagtccttgagggcgtgccaacctgttgtggggtaaatccggcc |
35349770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 80 - 286
Target Start/End: Original strand, 38466738 - 38466944
Alignment:
| Q |
80 |
atgaagatttgtctgtatgcattggaccatatgtaacttaaaaaatacttgcaaggttcacaccacaacacgtaaaagttatgcaatcattttaaatcgc |
179 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38466738 |
atgaagatttgtctgtatgcattagaccatatgtaacttaaaaaatacttgcaaggttcacaccacaacacgtaaaagttatgcaatcattttaaattgc |
38466837 |
T |
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| Q |
180 |
ccctacctcctacataaaccatagaaacccaagaaccaacagggacgttgaaaaagtccttgagggcgtgccaacctgttgtgaggtaaatccggccttt |
279 |
Q |
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| T |
38466838 |
ccctacctcctacataaaccatagaaacccaagaaccaacagggacgttgaaaaagtccttgagggggtgccaacctgttgtgaggtaaatccgaccatt |
38466937 |
T |
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| Q |
280 |
gcttctc |
286 |
Q |
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| ||||| |
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| T |
38466938 |
gtttctc |
38466944 |
T |
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