View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10422_low_28 (Length: 240)

Name: NF10422_low_28
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10422_low_28
NF10422_low_28
[»] chr6 (24 HSPs)
chr6 (1-225)||(5102878-5103102)
chr6 (1-140)||(5096386-5096525)
chr6 (1-132)||(5066958-5067089)
chr6 (1-139)||(5157892-5158031)
chr6 (2-139)||(5425589-5425726)
chr6 (1-139)||(5370249-5370388)
chr6 (10-139)||(5350075-5350204)
chr6 (1-88)||(5244131-5244218)
chr6 (1-78)||(5128681-5128758)
chr6 (1-78)||(5176479-5176556)
chr6 (1-78)||(5278306-5278383)
chr6 (1-96)||(5447309-5447404)
chr6 (1-78)||(5396690-5396767)
chr6 (20-85)||(5182210-5182275)
chr6 (1-124)||(5690423-5690546)
chr6 (25-137)||(5284677-5284786)
chr6 (1-83)||(5354878-5354960)
chr6 (21-78)||(5257618-5257675)
chr6 (1-78)||(5433775-5433852)
chr6 (1-70)||(5074172-5074241)
chr6 (1-78)||(5147160-5147237)
chr6 (25-78)||(5344601-5344654)
chr6 (3-78)||(5383066-5383141)
chr6 (30-78)||(5446897-5446945)
[»] chr7 (1 HSPs)
chr7 (18-85)||(36214110-36214177)
[»] chr4 (6 HSPs)
chr4 (1-80)||(4124203-4124282)
chr4 (1-77)||(4344387-4344463)
chr4 (1-73)||(4320883-4320955)
chr4 (25-76)||(4335087-4335138)
chr4 (21-78)||(4133707-4133764)
chr4 (1-66)||(4360829-4360894)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-75)||(9164-9238)
[»] chr3 (4 HSPs)
chr3 (25-78)||(47987140-47987193)
chr3 (25-78)||(47996427-47996480)
chr3 (25-78)||(48005714-48005767)
chr3 (25-78)||(48014999-48015052)
[»] chr5 (1 HSPs)
chr5 (1-78)||(8877349-8877426)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5102878 - 5103102
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaaggtaaacttaa 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5102878 aaaagtcaggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccaacctctgcaagaacagacatgtcaaaggtaaacttaa 5102977  T
Q  101 ggaagactcttcaaaaaataaatggaaacaattacaatgatatgatgcgctgttttatcgaataccaatatcagagcaaaattttgaaccaaggttaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5102978 ggaagactcttcaaaaaataaatggaaacaattacaatgatatgatgcgctgttttatcgaataccaatatcagagcaaaattttgaaccaaggttaaat 5103077  T
Q  201 ttctgtacacagtgttccagaaatt 225  Q
    |||||||||||||||| ||||||||    
T  5103078 ttctgtacacagtgttgcagaaatt 5103102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 5096525 - 5096386
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaaggtaaacttaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  5096525 aaaagtctggggtgtgtgtcagacaatgagaatgactaagatttagaattttcagtttttccatcctctgcaagaacagacatgtcaaagataaacttaa 5096426  T
Q  101 ggaagactcttcaaaaaataaatggaaacaattacaatga 140  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5096425 ggaagactcttcaaaaaataaatggaaacaattacaatga 5096386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 5066958 - 5067089
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaaggtaaacttaa 100  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5066958 aaaagtcaggggtgtgcatcagacaatgagaatggctaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaagggaaacttaa 5067057  T
Q  101 ggaagactcttcaaaaaataaatggaaacaat 132  Q
    ||| |||||||| |||||||||||||| ||||    
T  5067058 ggacgactcttcgaaaaataaatggaagcaat 5067089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 5157892 - 5158031
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaaggtaaacttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  5157892 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaatttttagcttttccatcatctgcaagaacagacatgtcaaagggaaacttaa 5157991  T
Q  101 ggaagactcttc-aaaaaataaatggaaacaattacaatg 139  Q
    ||||||| |||| ||||||  ||||||||| || ||||||    
T  5157992 ggaagacacttcgaaaaaaataatggaaacgataacaatg 5158031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 5425726 - 5425589
Alignment:
Q  2 aaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaaggtaaacttaag 101  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| | |||||||||    
T  5425726 aaagtcaggggtgcgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatccactgcaaaaacagtcatgtcaaaaggaaacttaag 5425627  T
Q  102 gaagactcttcaaaaaataaatggaaacaattacaatg 139  Q
    || |||||||  |||||||||||||| |||| ||||||    
T  5425626 gacgactctttgaaaaataaatggaagcaataacaatg 5425589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 5370388 - 5370249
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaaggtaaacttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| |||||||| ||||||||    
T  5370388 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaatttttagcttttccatcatctgcaagaacaaacaagtcaaagggaaacttaa 5370289  T
Q  101 ggaagactc-ttcaaaaaataaatggaaacaattacaatg 139  Q
    ||||||| | || |||||| || ||||| |||| ||||||    
T  5370288 ggaagacgctttgaaaaaaaaactggaagcaataacaatg 5370249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 5350204 - 5350075
Alignment:
Q  10 gggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaaggtaaacttaaggaagactc 109  Q
    ||||||| |||||||||  |||||||||||||||||||||||||||||||||||||| ||  || |||||| |||||||||| |||||||||||  ||||    
T  5350204 gggtgtgtgtcagacaacaagaatgactaagatttagaattttcagcttttccatccactttaaaaacagaaatgtcaaagggaaacttaaggacaactc 5350105  T
Q  110 ttcaaaaaataaatggaaacaattacaatg 139  Q
    ||| |||||||||||||| |||| ||||||    
T  5350104 ttcgaaaaataaatggaagcaataacaatg 5350075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 5244131 - 5244218
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaa 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||  ||||||||||||||||||    
T  5244131 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaatttttagcttttccatcatccacaagaacagacatgtcaa 5244218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5128681 - 5128758
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    |||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||    
T  5128681 aaaagtctggggtgtgtgtcagacaatgagaatgactatgattgagaattttcagcttctccatcatctgcaagaaca 5128758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5176556 - 5176479
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||||||||||| |  |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  5176556 aaaagtctggggtctctgtcagataatgagaatgactaagattaagaattttcagcttctccatcctctgcaagaaca 5176479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5278383 - 5278306
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||||||||||| |  |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  5278383 aaaagtctggggtctctgtcagataatgagaatgactaagattaagaattttcagcttctccatcctctgcaagaaca 5278306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 5447404 - 5447309
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaaggtaaac 96  Q
    ||||||| ||| |||  ||||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||||||| | |||||||||| ||||    
T  5447404 aaaagtccgggatgtttgtcagacgatgagaatgactaagattgagatttttcagattttccatcctctgcaagaacaaaaatgtcaaagggaaac 5447309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5396767 - 5396690
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||||||||||| || |||| | ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  5396767 aaaagtctggggtctgtgtcaaataatgagaatgactaagattgagaattttcagcttctccagcctctgcaagaaca 5396690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 5182210 - 5182275
Alignment:
Q  20 cagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgt 85  Q
    |||| ||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||    
T  5182210 cagaaaatgagaatgactaagattgagaattttcagcttctccagcctctgcaagaacagaaatgt 5182275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 5690423 - 5690546
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaaggtaaacttaa 100  Q
    ||||||||||||| || |||||| ||||||| ||||||||||| |||||||| ||||| |||||| ||| |||||| | | || | ||||  |||||||     
T  5690423 aaaagtctggggtctgtgtcagataatgagagtgactaagattgagaattttaagcttctccatcatctacaagaatataaatattaaagagaaacttat 5690522  T
Q  101 ggaagactcttcaaaaaataaatg 124  Q
    | ||||  ||||||||||||||||    
T  5690523 gtaagaagcttcaaaaaataaatg 5690546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 5284677 - 5284786
Alignment:
Q  25 aatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgtcaaaggtaaacttaaggaagactcttcaaaaaataaatg 124  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||||||||||| | || | |  |  ||||||||||| |   ||||||||| ||||||    
T  5284677 aatgggaatgactaagattgagaattttcagcttctccatcctctgcaagaacataaatattattgagaaacttaaggagg---cttcaaaaagtaaatg 5284773  T
Q  125 gaaacaattacaa 137  Q
     ||||||||||||    
T  5284774 aaaacaattacaa 5284786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5354878 - 5354960
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacat 83  Q
    ||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| |  ||||| ||||||||||||| ||||    
T  5354878 aaaagtcaggggtatgtgtcagacaatgtgaatgactaagattgagaattttcagatgctccattctctgcaagaacatacat 5354960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 5257618 - 5257675
Alignment:
Q  21 agacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    |||||| | |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  5257618 agacaacgggaatgactaagattgagaattttcagcttctccatcctctgcaagaaca 5257675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5433852 - 5433775
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    |||||||||| || || |||||| ||||| |||||||||| || |||||||||||||| ||||| |||||||||||||    
T  5433852 aaaagtctggtgtttgtgtcagataatgacaatgactaaggttaagaattttcagcttctccattctctgcaagaaca 5433775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 5074172 - 5074241
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctg 70  Q
    |||| ||||| || ||||||||| ||||||||||||||||||| || ||||||||||| |||| ||||||    
T  5074172 aaaaatctggagtttgcgtcagataatgagaatgactaagattgagtattttcagcttctccaacctctg 5074241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 5147160 - 5147237
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    |||||| |||||| || |||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||||||    
T  5147160 aaaagtttggggtctgtgtcaaataatgagagtgactaagcttgagaatttttagcttctccatcctctgcaagaaca 5147237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 5344654 - 5344601
Alignment:
Q  25 aatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||||||||||||||||| |||||||||||||| |||||| |||| |||||||    
T  5344654 aatgagaatgactaagattgagaattttcagcttctccatcatctgtaagaaca 5344601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 5383141 - 5383066
Alignment:
Q  3 aagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||||||||| |||  |||  |||||||||||||||| ||||| ||||||||  | |||||||||||||||||||    
T  5383141 aagtctggggtctgcaccaggtaatgagaatgactaaggtttaggattttcagtatctccatcctctgcaagaaca 5383066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 5446945 - 5446897
Alignment:
Q  30 gaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||| |||||||| |||||||| ||||| |||||||||||||||||||    
T  5446945 gaatggctaagattgagaatttttagcttctccatcctctgcaagaaca 5446897  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 36214110 - 36214177
Alignment:
Q  18 gtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacagacatgt 85  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  36214110 gtcagataatgagaatgactaagattgagaattttcagcttttccagcctctgcaagaacagaaatgt 36214177  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4124203 - 4124282
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaacaga 80  Q
    ||||||| ||||| || |||||| ||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||    
T  4124203 aaaagtcaggggtctgtgtcagataatgagaatgactaagattgagaattttcagctgctccattctctgcaagaacaga 4124282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4344463 - 4344387
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaac 77  Q
    ||||||| || || || |||||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||    
T  4344463 aaaagtcaggcgtctgtgtcagacaatgagaatgactgagattgagaattttcagctgatccatcctctgcaagaac 4344387  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4320883 - 4320955
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaa 73  Q
    ||||||| ||||| || |||| |  |||||||||||||||||||||||| |||||||  ||||||||||||||    
T  4320883 aaaagtcaggggtctgtgtcaaatgatgagaatgactaagatttagaatcttcagctgctccatcctctgcaa 4320955  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 4335138 - 4335087
Alignment:
Q  25 aatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaa 76  Q
    ||||||||||||||||||| |||||||||| ||  |||||||||||||||||    
T  4335138 aatgagaatgactaagattgagaattttcaactgctccatcctctgcaagaa 4335087  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 4133707 - 4133764
Alignment:
Q  21 agacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||||||||||||||||||||| |||| ||| || || |||| ||||||||||||||    
T  4133707 agacaatgagaatgactaagattgagaaattttagattctccagcctctgcaagaaca 4133764  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 4360894 - 4360829
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcc 66  Q
    ||||||| || || || |||||| | ||||||||||||||||| |||||||||||||  |||||||    
T  4360894 aaaagtcaggcgtctgtgtcagatattgagaatgactaagattgagaattttcagctgctccatcc 4360829  T

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Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 9164 - 9238
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaaga 75  Q
    ||||||||||||| ||| ||| | ||||||||||||||||||| ||||||||||||||  ||| |||||||||||    
T  9164 aaaagtctggggtatgcatcaaataatgagaatgactaagattgagaattttcagcttcgccagcctctgcaaga 9238  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 47987140 - 47987193
Alignment:
Q  25 aatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  47987140 aatgagaatgactaagattgagaatttttagcttttccatcttctgcaagaaca 47987193  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 47996427 - 47996480
Alignment:
Q  25 aatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  47996427 aatgagaatgactaagattgagaatttttagcttttccatcttctgcaagaaca 47996480  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 48005714 - 48005767
Alignment:
Q  25 aatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  48005714 aatgagaatgactaagattgagaatttttagcttttccatcttctgcaagaaca 48005767  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 48014999 - 48015052
Alignment:
Q  25 aatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  48014999 aatgagaatgactaagattgagaatttttagcttttccatcttctgcaagaaca 48015052  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8877426 - 8877349
Alignment:
Q  1 aaaagtctggggtgtgcgtcagacaatgagaatgactaagatttagaattttcagcttttccatcctctgcaagaaca 78  Q
    |||||||||| || || ||||||  |||||| || |||||||| |||||||| ||||| |||||||||||||||||||    
T  8877426 aaaagtctggagtttgtgtcagatgatgagagtggctaagattgagaatttttagcttctccatcctctgcaagaaca 8877349  T

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