View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10422_low_3 (Length: 599)
Name: NF10422_low_3
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_3 |
 | |
|
| [»] scaffold0855 (1 HSPs) |
| | |
|
| [»] scaffold0847 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Complemental strand, 9639086 - 9638638
Alignment:
| Q |
12 |
caaagggggagaaaaagggatagaactaactccaaggccagtttgaaatatagaacgtggtcaaacatccacccctccaaaatagaaaggtggacaacat |
111 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
9639086 |
caaagagggagaaaaagggatagaactaactccaaggccagtttgaaatatagaacgtggtcaaacatccacccctccaaaataaaaaggtggataacat |
9638987 |
T |
|
| Q |
112 |
gtgtagatgttaatcaaacactcagtcgtacaagtaaaaaatctccctcaactcagtcgtatgagcaagatataagttgactaagttcgaaatgtgcata |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
|
|
| T |
9638986 |
gtgtagatgttaatcaaacactcagtcgtacaagtaaaaaatctccctcaactcagtcgtatgagcaagatataagttgactaagtctggaatgtacata |
9638887 |
T |
|
| Q |
212 |
aagacttattttcttaataatagggtgatggaggacatggatagctgatataacacccccaacaaactggtgttaggctataactcagcctgttacttac |
311 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9638886 |
aagacttattttcttaataataggatgatggaggacatggatagctgatataacacccccaacaaactggtgttaggctataactcagcctgttacttac |
9638787 |
T |
|
| Q |
312 |
attaatgatgttggtcatgatcatacatgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9638786 |
attaatgatgttggtcatgatcatacctgtaatatggtagataatgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaatttt |
9638687 |
T |
|
| Q |
412 |
gtaaatacctcatcttaaagattattcaaaacatacatcaaatcaaacaa |
461 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9638686 |
gtaaatacctcatcttaaagattattc-aaacatacatcaaatcaaacaa |
9638638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 513 - 583
Target Start/End: Complemental strand, 9638583 - 9638513
Alignment:
| Q |
513 |
atgtcttcttaagtaatagttcacaaatttcacttgtgtaacattgtggtgggaatatcacatgacatttg |
583 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9638583 |
atgtcttcttaagtagtagttcacaaatttcacttgtgtaacattgtggtggaaatatcacgtgacatttg |
9638513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 539 - 581
Target Start/End: Original strand, 9638381 - 9638423
Alignment:
| Q |
539 |
atttcacttgtgtaacattgtggtgggaatatcacatgacatt |
581 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
9638381 |
atttcacttgtgtgacattgtggtgggaatgtcacatgacatt |
9638423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 346 - 461
Target Start/End: Original strand, 1626663 - 1626776
Alignment:
| Q |
346 |
tggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacat |
445 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| | ||| ||||||||| |||||||| | |||||| ||| |||||| ||||||| ||| |
|
|
| T |
1626663 |
tggtagatagtgggtcaacaatgtggcaagcaatgttagcggagg-tgcttagttgttctaagtctataaatataccattgtaaaga-tattcaacacac |
1626760 |
T |
|
| Q |
446 |
acatcaaatcaaacaa |
461 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1626761 |
acatcaaatcaaacaa |
1626776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 539 - 581
Target Start/End: Original strand, 15569581 - 15569623
Alignment:
| Q |
539 |
atttcacttgtgtaacattgtggtgggaatatcacatgacatt |
581 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
15569581 |
atttcacttgtgtgacattgtggtgggaatgtcacatgacatt |
15569623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 461
Target Start/End: Original strand, 52456365 - 52456523
Alignment:
| Q |
303 |
gttacttacattaatgatgttggtcatgatcatacatg---taatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagt |
399 |
Q |
| |
|
|||||||| |||| ||||||| | ||||||| |||||| ||||||| |||||||| ||||||| ||| || ||||||||| || | |||||||| |
|
|
| T |
52456365 |
gttacttatattagtgatgttagccatgatcttacatgatataatatgatagatagtcattcaaaaacatggtaaacaatgttagcataagttgcttagt |
52456464 |
T |
|
| Q |
400 |
tattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatcaaacaa |
461 |
Q |
| |
|
|||||||||| | ||| || |||||| ||||||||||| || |||||||| ||||||||| |
|
|
| T |
52456465 |
tattctaagtgtataacta-ctcatcgcaaagattattc--aagatacatcacatcaaacaa |
52456523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 3803998 - 3804138
Alignment:
| Q |
303 |
gttacttacattaatgatgttggtcatgatcatacatgt---aatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagt |
399 |
Q |
| |
|
|||||||| |||| | ||||| ||||||||||| ||||| |||||||||| |||||| |||||| ||||||| | ||| || | | ||| |||||||| |
|
|
| T |
3803998 |
gttacttatattagtaatgttagtcatgatcattcatgttgaaatatggtagttagtggatcaaaattgtggcaggaaatttttggggaggttgcttagt |
3804097 |
T |
|
| Q |
400 |
tattctaagtttgtaaatacctcatcttaaagattattcaa |
440 |
Q |
| |
|
|| ||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
3804098 |
taatctaagtctataaatacctcattggaaagattattcaa |
3804138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 13716078 - 13715971
Alignment:
| Q |
90 |
aaaatagaaaggtggacaacatgtgtagatgttaatcaaacactcagtcgtacaagtaaaaaatctccctcaactcagtcgtatgagcaagatataagtt |
189 |
Q |
| |
|
||||||| || |||||||||||| ||| ||| || ||| |||||||||||||||||| || | |||||||||||| ||||||| ||||||| || |
|
|
| T |
13716078 |
aaaataggaatgtggacaacatgagtaaatgctagccaagcactcagtcgtacaagtacaagtttgccctcaactcagctgtatgagtaagatatcagcc |
13715979 |
T |
|
| Q |
190 |
gactaagt |
197 |
Q |
| |
|
|||||||| |
|
|
| T |
13715978 |
gactaagt |
13715971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 408
Target Start/End: Complemental strand, 13715847 - 13715777
Alignment:
| Q |
338 |
atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaag |
408 |
Q |
| |
|
||||||||||||||| |||| | |||||| || |||| ||||||||| ||| | | ||||||||||||||| |
|
|
| T |
13715847 |
atgtaatatggtagaaagtgaggcaaaaacgttgcaaacaatgttagtgtacggttcttagttattctaag |
13715777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 22754505 - 22754434
Alignment:
| Q |
338 |
atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagt |
409 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| |||||||||||| ||||| || ||||||||| ||||| |
|
|
| T |
22754505 |
atgtaaaatggtagatagtgggcgaaaaatgtggaaagcaatgttagtgtaggttgtttagttattataagt |
22754434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 27955212 - 27955143
Alignment:
| Q |
355 |
gtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcat |
424 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||| | |||||||| ||||||| | |||||||||||| |
|
|
| T |
27955212 |
gtgggtcaaaaatgtggaaaacaatgttagtgtaggttccttagttactctaagtgtataaatacctcat |
27955143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 440
Target Start/End: Complemental strand, 23035372 - 23035269
Alignment:
| Q |
338 |
atgtaatatggtagatagtgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcat-cttaaagattat |
436 |
Q |
| |
|
|||||||||||||||||||||| || ||| || ||||||| |||| ||||| ||||| ||||||| |||| | ||||||| |||| | ||||||||| |
|
|
| T |
23035372 |
atgtaatatggtagatagtgggccataaacgttacaagcaacgttaatgtaggttgcttggttattcgaagtctataaatacgtcatggtaaaagattat |
23035273 |
T |
|
| Q |
437 |
tcaa |
440 |
Q |
| |
|
|||| |
|
|
| T |
23035272 |
tcaa |
23035269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 23035507 - 23035459
Alignment:
| Q |
212 |
aagacttattttcttaataatagggtgatggaggacatggatagctgata |
261 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||| ||||| |
|
|
| T |
23035507 |
aagacttattctctta-taatagggtgatggaggacatcgatagttgata |
23035459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0855 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0855
Description:
Target: scaffold0855; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 461
Target Start/End: Original strand, 1800 - 1900
Alignment:
| Q |
356 |
tgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatc |
455 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || || ||||||||||||||||| | |||||||| ||| |||||| ||||| |||| |||||||||| |
|
|
| T |
1800 |
tgggtcaacaatgtggcaagtaatgttagtgtcgg-tgcttagttattctaagcctataaatacc-cattgtaaaga-tattc--aacacacatcaaatc |
1894 |
T |
|
| Q |
456 |
aaacaa |
461 |
Q |
| |
|
|||||| |
|
|
| T |
1895 |
aaacaa |
1900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0847 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0847
Description:
Target: scaffold0847; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 461
Target Start/End: Original strand, 1965 - 2065
Alignment:
| Q |
356 |
tgggtcaaaaatgtggcaagcaatgttagagtaggctgcttagttattctaagtttgtaaatacctcatcttaaagattattcaaaacatacatcaaatc |
455 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || || ||||||||||||||||| | |||||||| ||| |||||| ||||| |||| |||||||||| |
|
|
| T |
1965 |
tgggtcaacaatgtggcaagtaatgttagtgtcgg-tgcttagttattctaagcctataaatacc-cattgtaaaga-tattc--aacacacatcaaatc |
2059 |
T |
|
| Q |
456 |
aaacaa |
461 |
Q |
| |
|
|||||| |
|
|
| T |
2060 |
aaacaa |
2065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University