View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10422_low_4 (Length: 546)
Name: NF10422_low_4
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-172; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 34 - 529
Target Start/End: Original strand, 22941670 - 22942170
Alignment:
| Q |
34 |
taattttttcttttatgactatttattagaataaaattgttagtaaacctgttcttgatttcaaatctgctaaaaacccagatttggtgggtggaaagat |
133 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22941670 |
taattttttcttttatgactatttattagtataaaattgttagtaaacctgctcttgatttcaaatctgctaaaaacccagatttggtgggtggaaagat |
22941769 |
T |
|
| Q |
134 |
cagtttggccaatatatttccacctacctataattaatatgnnnnnnnagaggcatctgtgttgtgttggttatacttnnnnnnnnnnnnnnnnnnntgc |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| ||| |
|
|
| T |
22941770 |
cagtttggccaatatatttccacctacctataattaatgt-tttttttagaggcatctgtgttgggttggttatacttaaaaaaataaaaataaaa-tgc |
22941867 |
T |
|
| Q |
234 |
taatttgtgtgttcaagatcacgtgttaagaaactcattatagaaatataaatatacgtatcaaaattcggccatttaactttttacaagtaaatgtatt |
333 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22941868 |
taatttgtgtgttcaagagcacgtgttaagaaactcattatagaaatataaatatacttatcaaaattcggccatttaactttttacaagtaaatgtatt |
22941967 |
T |
|
| Q |
334 |
aagttttctaatgtaaaattgcttttttggttgattaatatgtgcccttagaacacaagttaacatgac--------nnnnnnngacaaaaattgtctac |
425 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22941968 |
aagttttttaatgtaaaattgttcttttggttg-ttaacatgtgtccttagaacacaagttaacatgacaaaaaaaaaaaaaaagacaaaaattgtctac |
22942066 |
T |
|
| Q |
426 |
ttttaatcgctgatttgcctaagccagtgattttaggtgcttaaaattccatgtaaagggatctaagatttcatttaatttaattattttatatatgatc |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22942067 |
ttttaatcgctgatttgcctaagccagtgattttaggtgcttaaaattccatgtaaagggatctaagatttcatttcatttaattattttatatatgatc |
22942166 |
T |
|
| Q |
526 |
aaat |
529 |
Q |
| |
|
|||| |
|
|
| T |
22942167 |
aaat |
22942170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 283 - 363
Target Start/End: Complemental strand, 39699680 - 39699600
Alignment:
| Q |
283 |
aaatatacgtatcaaaattcggccatttaactttttacaagtaaatgtattaagttttctaatgtaaaattgcttttttgg |
363 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||| |||| || |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
39699680 |
aaatatacgtatcaaaagtcgtgcatttaactttttaaaagttaaagtattatgttttataatgtaaaattgcttttttgg |
39699600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 6530376 - 6530474
Alignment:
| Q |
306 |
catttaactttttacaagtaaatgtattaagttttctaatgtaaaattgctttttt--ggttgattaatatgtgcccttagaacacaagttaacatgac |
402 |
Q |
| |
|
|||| ||||| ||| |||| ||| ||||| |||||| |||| ||| ||||| |||| ||||| |||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
6530376 |
cattcaacttcttaaaagtcaatatattatgttttccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagttaacatgac |
6530474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 402
Target Start/End: Original strand, 14275802 - 14275923
Alignment:
| Q |
283 |
aaatatacgtatcaaaattcggccatttaactttttacaagtaaatgtattaagttttctaatgtaaaattg--cttttttggttgattaatatgtgccc |
380 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| |||| ||| ||||| |||||| |||| ||||||| |||||| ||||| |||||||||||| |
|
|
| T |
14275802 |
aaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaatatattatgttttccaatgcaaaattgctctttttgggttgcttaatatgtgcct |
14275901 |
T |
|
| Q |
381 |
ttagaacacaagttaacatgac |
402 |
Q |
| |
|
|||| |||||||| |||||| |
|
|
| T |
14275902 |
ttagggaacaagttagcatgac |
14275923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 399
Target Start/End: Complemental strand, 13487794 - 13487699
Alignment:
| Q |
306 |
catttaactttttacaagtaaatgtattaagttttctaatgtaaaattgct-tttttg-gttgattaatatgtgcccttagaacacaagttaacat |
399 |
Q |
| |
|
|||||||||| ||| |||| || ||||| ||||| |||||||||||| | |||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
13487794 |
catttaacttcttaaaagttaaaatattatgtttttcaatgtaaaattgttatttttgagttccttaacatgtgcccttagaacacaagttaacat |
13487699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 3787528 - 3787596
Alignment:
| Q |
336 |
gttttctaatgtaaaattgcttttttgg--ttgattaatatgtgcccttagaacacaagttaacatgac |
402 |
Q |
| |
|
||||||||||||||||||||| |||| | || ||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
3787528 |
gttttctaatgtaaaattgctctttttgaattcattaacatgtgcccttaggacataagttaacatgac |
3787596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 402
Target Start/End: Original strand, 32786833 - 32786958
Alignment:
| Q |
279 |
atataaatatacgtatcaaaattcggccatttaactttttacaagtaaatgtattaagttttctaatgtaaaattgctttttt--ggttgattaatatgt |
376 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||||| ||| |||| || ||||| |||||| ||| ||| ||||| |||| |||| |||| |||| |
|
|
| T |
32786833 |
atataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaatattatgttttccaatacaaagttgctcttttcgggttccttaacatgt |
32786932 |
T |
|
| Q |
377 |
gcccttagaacacaagttaacatgac |
402 |
Q |
| |
|
|||||||| ||||||||| |||||| |
|
|
| T |
32786933 |
gcccttagggcacaagttagcatgac |
32786958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 28324686 - 28324581
Alignment:
| Q |
296 |
aaaattcggccatttaactttttacaagtaaatgtattaagttttctaatgtaaaattgct-tttttgg-ttgattaatatgtgcccttagaacacaagt |
393 |
Q |
| |
|
|||| ||| ||||| ||||| ||| || | ||| ||||| |||||| |||| ||||||||| ||||||| ||| |||| ||||| ||||| ||||||||| |
|
|
| T |
28324686 |
aaaaatcgtccattcaacttattaaaacttaatatattatgttttccaatgcaaaattgctgtttttggattgtttaacatgtgtccttaaaacacaagt |
28324587 |
T |
|
| Q |
394 |
taacat |
399 |
Q |
| |
|
|||||| |
|
|
| T |
28324586 |
taacat |
28324581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 402
Target Start/End: Complemental strand, 28675799 - 28675678
Alignment:
| Q |
283 |
aaatatacgtatcaaaattcggccatttaactttttacaagtaaatgtattaagttttctaatgtaaaattgctttttt--ggttgattaatatgtgccc |
380 |
Q |
| |
|
|||||||| |||||||||| |||| |||| |||| |||| || ||||| ||||||||||| ||||||||| || | ||||| |||| |||||||| |
|
|
| T |
28675799 |
aaatatacatatcaaaatttttgcattcaactgtttaaaagtcgatatattatgttttctaatgcaaaattgctcttattaggttgcttaacatgtgccc |
28675700 |
T |
|
| Q |
381 |
ttagaacacaagttaacatgac |
402 |
Q |
| |
|
| || |||||||||||||||| |
|
|
| T |
28675699 |
taagggcacaagttaacatgac |
28675678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University