View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10422_low_6 (Length: 506)
Name: NF10422_low_6
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 20 - 502
Target Start/End: Complemental strand, 9422830 - 9422348
Alignment:
| Q |
20 |
tgaaccaacgaaccggttcactttaggaactaattcagaacaactgaaccggattttctgaacatcaaaatctttcaaaaatggaagatgatcaccccaa |
119 |
Q |
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| T |
9422830 |
tgaaccaacgaaccggttcactttaggaactaattcagaacaactgaaccggattttctgaacatcaaaatctttcaaaaatggaagatgatcaccccaa |
9422731 |
T |
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| Q |
120 |
ttaagactacccaacaaatcataaccttgttcaaccaacccactaagttccatcattctctcattaacttcatcaatcttaaacctctgtccaaaaacag |
219 |
Q |
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| T |
9422730 |
ttaagaccacccaacaaatcataaccttgttcaaccaacccactaagttccatcattctctcattaacttcatcaatcttaaacctctgtccaaaaacag |
9422631 |
T |
|
| Q |
220 |
agcacatcatgttattaagcgatgcttttttcaaaacatctcgaacacagaaaccgccatgcagatgacggtttctaaacaagtcaatcatctgggtcgc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
9422630 |
agcacatcatgttattaagcgatgcttttttcaaaacatctcgaacacagaaaccgccatgcaaatgacggtttctgaacaagtcaatcatctgggtcgc |
9422531 |
T |
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| Q |
320 |
aatttcacttctctgcggcccagatgatttgatttgcatgggtgagaaaagatgattagtagaaatttttctaagggttcgccaataaacaccgtaaggt |
419 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9422530 |
aatttcactcctctgcggcccagatgatttgatttgcatgggtgaaaaaagatgattagtagaaatttttctaagggttcgccaataaacaccgtaaggt |
9422431 |
T |
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| Q |
420 |
gcgaatcctatggcacggttgaacataagagaataagctgattctttgataggacgatcagcaaagacagagctatggagaat |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9422430 |
gcgaatcctatggcacggttgaacataagagaataagctgattctttgataggacgatcagcaaagacagagctatggagaat |
9422348 |
T |
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