View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10422_low_7 (Length: 494)
Name: NF10422_low_7
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_7 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 54 - 494
Target Start/End: Original strand, 13286983 - 13287423
Alignment:
| Q |
54 |
attttatgtaatccgcgactcacaacactgatgtggtgcgagtctcttgtgatttaagggatgccgtgcaaattaagtaagctgcacgatacctttttgt |
153 |
Q |
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| T |
13286983 |
attttatgtaatccgcgactcacaacactgatgtggtgcgagtctcttgtgatttaagggatgccgtgcaaattaagtaagctgcgcgatacctttttgt |
13287082 |
T |
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| Q |
154 |
gtagttgtgtgttttcttgttgaaggaggtttaccttcttatagagctccacattttcttgatggattatgcttccctgcatttaaagaaattaaaacac |
253 |
Q |
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| T |
13287083 |
gtagttgtgtgttttcttgttgaaggaggtttaccttcttatagagctctacattttcttgatggattatgcttccctgcatttgaagaaattaaaacac |
13287182 |
T |
|
| Q |
254 |
aaagttcagcgagttttgcaaaattttagagagaaatattagtgaaggtcactgctaagagttacctttcggttcagctcttggatttcatctgtcagaa |
353 |
Q |
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| T |
13287183 |
aaagttcagcgagttttgcaaaattttagagagaaatattagtgaaggtcactggtaagagttacctttcggttcagctcttggatttcatctgtcagaa |
13287282 |
T |
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| Q |
354 |
ttttctcctgcagaatttgattcaacttgttaatatctggttttagcattgttcctaaatcctcatcaatgtatgaagcacaaacactcctcagattagg |
453 |
Q |
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| T |
13287283 |
ttttctcctgcagaatttgattcaacttgttaatatctgattttagcattgttcttaaatcctcatcaatgtatgaagcacatacactcctcagattagg |
13287382 |
T |
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| Q |
454 |
catgtccgacaggacacgacaccgacacttgtagttacact |
494 |
Q |
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| T |
13287383 |
cgtgtccgacaggacacgacaccgacacttgtagttacact |
13287423 |
T |
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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 47880429 - 47880479
Alignment:
| Q |
54 |
attttatgtaatccgcgactcacaacactgatgtggtgcgagtctcttgtg |
104 |
Q |
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| T |
47880429 |
attttatgtaatccgcgactcacaacactgatgtggtgtgagtctcttgtg |
47880479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 425 - 475
Target Start/End: Complemental strand, 2117174 - 2117124
Alignment:
| Q |
425 |
tatgaagcacaaacactcctcagattaggcatgtccgacaggacacgacac |
475 |
Q |
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| T |
2117174 |
tatgaagcacggacactcctccgattaggcatgtccgacacgacacgacac |
2117124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 494
Target Start/End: Original strand, 9911483 - 9911552
Alignment:
| Q |
425 |
tatgaagcacaaacactcctcagattaggcatgtccgacaggacacgacaccgacacttgtagttacact |
494 |
Q |
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| T |
9911483 |
tatgaagcatgaacactcctcggattaggcgtgtcctggttgacacgacaccgacacttgtaattacact |
9911552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 3209517 - 3209481
Alignment:
| Q |
425 |
tatgaagcacaaacactcctcagattaggcatgtccg |
461 |
Q |
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| T |
3209517 |
tatgaagcacaaacactcctcggattaggcgtgtccg |
3209481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 460
Target Start/End: Original strand, 23130405 - 23130437
Alignment:
| Q |
428 |
gaagcacaaacactcctcagattaggcatgtcc |
460 |
Q |
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| T |
23130405 |
gaagcacatacactcctcagattaggcatgtcc |
23130437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 3142021 - 3142057
Alignment:
| Q |
424 |
gtatgaagcacaaacactcctcagattaggcatgtcc |
460 |
Q |
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| T |
3142021 |
gtatgaagcacaaacactactcagattaggcatgtcc |
3142057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 456 - 494
Target Start/End: Complemental strand, 2334323 - 2334285
Alignment:
| Q |
456 |
tgtccgacaggacacgacaccgacacttgtagttacact |
494 |
Q |
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| T |
2334323 |
tgtccgacacgacacgacaccgacacttgtaattacact |
2334285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 21568557 - 21568597
Alignment:
| Q |
420 |
caatgtatgaagcacaaacactcctcagattaggcatgtcc |
460 |
Q |
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| T |
21568557 |
caatctatgaagcacagacactcctcagattaagcatgtcc |
21568597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 453
Target Start/End: Complemental strand, 57053 - 57024
Alignment:
| Q |
424 |
gtatgaagcacaaacactcctcagattagg |
453 |
Q |
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| T |
57053 |
gtatgaagcacaaacactcctcagattagg |
57024 |
T |
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