View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10422_low_8 (Length: 459)
Name: NF10422_low_8
Description: NF10422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10422_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 48 - 448
Target Start/End: Original strand, 24268298 - 24268698
Alignment:
| Q |
48 |
ataaacgcttatgatgtatgcgcttaattatgatgttaatcctaacaggacccccatggcatacatgactaaggcaaaaactgaagtgggagtaaaacaa |
147 |
Q |
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| T |
24268298 |
ataaacgcttatgatgtatgcgcttaattatgatgttaatcctaacaggacccccatggcatacatgactaaggcaaaaactgaagtgggagtaaaacca |
24268397 |
T |
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| Q |
148 |
gctccagtaatagcatcactctcatctaggggacctaatcccatccaaccaagaatcctcaaggtccactctttgtttcacaaactatggcattagtgca |
247 |
Q |
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| T |
24268398 |
gctccagtaatagcatcactctcatctaggggacctaatcccatccaaccaataatcctcaaggtccactctttgtttcacaaactatggcattagtgca |
24268497 |
T |
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| Q |
248 |
ttcaattactccttaatgtgtcattatcatactaaagatcatttttgtttcgattttcagcctgatattactgcaccaggtgtggacattctttatgctt |
347 |
Q |
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| T |
24268498 |
ttcaattactccttaatgtgtcattatcatactaaagatcatttttgtttcgattttcagcctgatattactgcaccaggtgtggacattctttatgctt |
24268597 |
T |
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| Q |
348 |
acataggagccataagtccaactggtctagcatcagataatcgtcggattccatataatatagggtcaggaacttctatatcatgccctcatgtttctgc |
447 |
Q |
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| T |
24268598 |
acataggagccataagtccaactggtctagcatcagataatcaatggattccatataatatagggtcaggaacttctatatcatgccctcatgtttctgc |
24268697 |
T |
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| Q |
448 |
c |
448 |
Q |
| |
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| T |
24268698 |
c |
24268698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24265971 - 24266023
Alignment:
| Q |
1 |
cacaccatttttcattaattacttt-acaacactctttttaaacaataataaa |
52 |
Q |
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| T |
24265971 |
cacaccatttttcattaattacttttacaacactctttttaaacaataataaa |
24266023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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