View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10423_2 (Length: 546)
Name: NF10423_2
Description: NF10423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10423_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 177 - 519
Target Start/End: Complemental strand, 44767665 - 44767323
Alignment:
| Q |
177 |
gtcaatctgaatgaaacgaacataacaataagatgagaaatcaaaactacgtaccaaaacgcgaacaacaacattgtatcacttaaacgacgaaatcaca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
44767665 |
gtcaatctgaatgaaacgaacataacaataagatgagaaatcaaaactacacaccaaaacgcgaacaacaacattttatcactcaaacgacgaaatcaca |
44767566 |
T |
|
| Q |
277 |
aacaaaacataatacaaaaacggaatgtatgtactaaaataccacttatttgaataggagaagnnnnnnntgatttagataagtgattttggaccaaact |
376 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
44767565 |
aacaaaacataatacaaaaacggaatctatgtactaaaataccacttatttgaataggagaagaaaaaaatgatttagatgagtaattttggaccaaact |
44767466 |
T |
|
| Q |
377 |
aatgattgaacatcaattattaaccactaaacgataactttttcccttgaataatttcatggaataatcttgtttccaatcttttcaatttgcatgttga |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44767465 |
aatgattgaacatcaattattaaccactaaacgataactttttcccttgaataatttcatggaataatcttctttccaatcttttcaatttgcatgttga |
44767366 |
T |
|
| Q |
477 |
tgttttgtttaaatgttgattgtactcttttaattgtttgttg |
519 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44767365 |
tgttttgtttaaatgttgattatactcttttaattgtttgttg |
44767323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 44767790 - 44767741
Alignment:
| Q |
96 |
gtgacaaaatgcatacaaatgtgacaaaataaaggtgttcggaataccat |
145 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44767790 |
gtgacaaaatgtttacaaatgtgacaaaataaaggcattcggaataccat |
44767741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Original strand, 44110872 - 44110912
Alignment:
| Q |
479 |
ttttgtttaaatgttgattgtactcttttaattgtttgttg |
519 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
44110872 |
ttttgtttaaatattgattgtattcttttaattgtttgttg |
44110912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University