View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10423_3 (Length: 407)
Name: NF10423_3
Description: NF10423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10423_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 407
Target Start/End: Complemental strand, 32817479 - 32817087
Alignment:
| Q |
14 |
gaagaagaaaaagatgataaaaaaggaaggaaattggtgcatcaaacatcggattctgctatgcataaggcaggtagtaaacatcattgtggaaagatga |
113 |
Q |
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| T |
32817479 |
gaagaagaaaaagatgataaaaaaggaaggaaattggtgcatcaaacatcggattctgctatgcataaggcaggtagtaaacatcattgtggaaagatga |
32817380 |
T |
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| Q |
114 |
aaggacttgatcatagaagtgatggcaatagaaggaaaagcaaattgctaagaacaccatctttgcctccatcaatagggagagaggaaaagtttcaaga |
213 |
Q |
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| T |
32817379 |
aaggacttgatcatagaagtgatagcaatagaaggaaaagcaaattgctaagaacaccatctttgcctccatcaatagggagagaggaaaagtttcaaga |
32817280 |
T |
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| Q |
214 |
aaccgattcaagaactggaagatcccgaaaacaaccatcaacacctcccaataatgacaacttgcctccaaggttaacatctaaggtactataaaattca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
32817279 |
aaccgattcaagaactggaagatcccgaaaacaaccatcagcacctcccaataatgacaacttgcctccaaggttaacctctaaggtactataaaaatca |
32817180 |
T |
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| Q |
314 |
ccttgcttttataaatatctaagtaatgtatagacnnnnnnnctcgtttatgcgcgtaggttttaaattgtgattgtgttgtgattcttgatat |
407 |
Q |
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| T |
32817179 |
ccttgcttttataaatatctaagtaatgtatagac-ttttttctcgtttatgtgcgtaggttttaaattgtgactgtgttgtgattcttgatat |
32817087 |
T |
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