View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10423_4 (Length: 317)

Name: NF10423_4
Description: NF10423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10423_4
NF10423_4
[»] chr7 (4 HSPs)
chr7 (9-292)||(46654368-46654652)
chr7 (207-270)||(46653907-46653970)
chr7 (198-266)||(17037957-17038025)
chr7 (44-82)||(17037505-17037543)
[»] scaffold0429 (2 HSPs)
scaffold0429 (9-292)||(3982-4266)
scaffold0429 (198-293)||(3497-3593)
[»] chr1 (5 HSPs)
chr1 (13-293)||(48167206-48167487)
chr1 (207-291)||(48166718-48166803)
chr1 (209-266)||(34153768-34153825)
chr1 (207-268)||(34153035-34153096)
chr1 (14-66)||(30322507-30322559)
[»] chr3 (1 HSPs)
chr3 (9-125)||(1253201-1253320)
[»] chr5 (1 HSPs)
chr5 (44-82)||(7317794-7317832)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 46654368 - 46654652
Alignment:
Q  9 agcagagatggtgagggattgtagttttcatgaacaacaaagacacggtggcggtggatcacgacagagtgattttcattcacggtggcgcttaagctgc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  46654368 agcagagatggtgagggattgtagttttcatgaacaacaaagacacagtggtggtggatcacggcagagtgattttcattcatggtggcgcttaagctgc 46654467  T
Q  109 gcaacggaagccgaaaatgtgagagggagaagaagaagggtgtacgattgagaaaaggggaacaatgatatgtttgttttaannnnnnnaatctcgaaca 208  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||     
T  46654468 gcaacggaagccgaaaatgtgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgaaatgtttgttttaatttttttaatctcgaacg 46654567  T
Q  209 ttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactc 292  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||    
T  46654568 ttgattttttacatgccacttatcacacatccaaccaagggaatggaaaactggaggaattaagtactggagcagatctggactc 46654652  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 46653970 - 46653907
Alignment:
Q  207 cattgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatta 270  Q
    ||||| ||||||||||||||||||||| ||||||||  | |||| |||||||| ||||||||||    
T  46653970 cattggttttttacatgccacttgtcatacatccaagtaggggactgggaaacaggaggaatta 46653907  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 266
Target Start/End: Original strand, 17037957 - 17038025
Alignment:
Q  198 aatctcgaacattgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggagga 266  Q
    |||||| | |||||||||| ||  |||||||||||| ||||| || ||||||| |||||||||||||||    
T  17037957 aatctcaaccattgattttgtatgtgccacttgtcatacatctaagcaagggattgggaaactggagga 17038025  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 17037543 - 17037505
Alignment:
Q  44 aacaaagacacggtggcggtggatcacgacagagtgatt 82  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  17037543 aacaaagacacggtggcggcggatcacggcagagtgatt 17037505  T

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Target: scaffold0429 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 3982 - 4266
Alignment:
Q  9 agcagagatggtgagggattgtagttttcatgaacaacaaagacacggtggcggtggatcacgacagagtgattttcattcacggtggcgcttaagctgc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  3982 agcagagatggtgagggattgtagttttcatgaacaacaaagacacagtggtggtggatcacgacagagtgattttcattcacgctggcgcttaagctgc 4081  T
Q  109 gcaacggaagccgaaaatgtgagagggagaagaagaagggtgtacgattgagaaaaggggaacaatgatatgtttgttttaannnnnnnaatctcgaaca 208  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||| ||     
T  4082 gcaacggaagccgaaaacatgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgaaatgtttgttttaatttttttaatctcggacg 4181  T
Q  209 ttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactc 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||| ||||    
T  4182 ttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaaatggagaaattaagtactggagcatatctgaactc 4266  T

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Target: scaffold0429; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 3593 - 3497
Alignment:
Q  198 aatctcgaacattgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactcg 293  Q
    |||||| | ||||| ||||||||||||||||||||| |||||||| ||| ||| |||||||| ||||||||| |||| ||||| | |||||||||||    
T  3593 aatctcaaccattggttttttacatgccacttgtcatacatccaagcaatggactgggaaacaggaggaattaagtactggaggagatctggactcg 3497  T

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Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 48167206 - 48167487
Alignment:
Q  13 gagatggtgagggattgtagttttcatgaacaacaaagacacggtggcggtggatcacgacagagtgattttcattcacggtggcgcttaagctgcgcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||    
T  48167206 gagatggtgagggattgtagttttcatgaacaacaaagacacggtggtggtggatcacggcggagtgattttcattcatggtggcgcttaagctgcgcaa 48167305  T
Q  113 cggaagccgaaaatgtgagagggagaagaagaagggtgtacgattgagaaaaggggaacaatgatatgtttgttttaannnnnnnaatctcgaacattga 212  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||| ||||    
T  48167306 gggaagccgaaaatgtgggagggagaagaagaagggtgtacgattgagaaaaggggaacaatgaaatgtttgttttaatttttttaatctcgaacgttga 48167405  T
Q  213 ttttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggactcg 293  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||||||| |||||||||||    
T  48167406 ttttttacatgccacttgtcacacatccaaccaaaggaataggaaaatggaggaattaagtactggagcagatctggactcg 48167487  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 48166803 - 48166718
Alignment:
Q  207 cattgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaatt-agtattggagcatatctggact 291  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||| |||| ||||| | |||||||||    
T  48166803 cattggttttttacatgccacttgtcatacatccaagcaagggactgggaaacaggaggaattaagtactggaggagatctggact 48166718  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 34153768 - 34153825
Alignment:
Q  209 ttgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggagga 266  Q
    |||||||| || ||||||||||||| ||||| || ||||||| |||||||||||||||    
T  34153768 ttgattttgtatatgccacttgtcatacatctaagcaagggattgggaaactggagga 34153825  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 34153096 - 34153035
Alignment:
Q  207 cattgattttttacatgccacttgtcacacatccaaccaagggaatgggaaactggaggaat 268  Q
    |||||||| ||| |||||||| ||||||| ||| || ||||||| |||||||||||| ||||    
T  34153096 cattgattatttccatgccacgtgtcacatatctaagcaagggactgggaaactggaagaat 34153035  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 30322559 - 30322507
Alignment:
Q  14 agatggtgagggattgtagttttcatgaacaacaaagacacggtggcggtgga 66  Q
    ||||||| ||| ||| ||||||||||||||||||||||||  |||||| ||||    
T  30322559 agatggtaaggaattatagttttcatgaacaacaaagacatagtggcgttgga 30322507  T

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Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 1253201 - 1253320
Alignment:
Q  9 agcagagatggtgagggattgtag---ttttcatgaacaacaaagacacggtggcggtggatcacgacagagtgattttcattcacggtggcgcttaagc 105  Q
    ||||| ||||||||||| ||||||   |||||||||||||||||||||| |||| ||||||| ||| | |||||||||||||||||| ||||||||||||    
T  1253201 agcagggatggtgagggcttgtagtagttttcatgaacaacaaagacacagtggtggtggatgacggcggagtgattttcattcacgatggcgcttaagc 1253300  T
Q  106 tgcgcaacggaagccgaaaa 125  Q
    ||| ||| |||||| |||||    
T  1253301 tgcacaagggaagcagaaaa 1253320  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 7317794 - 7317832
Alignment:
Q  44 aacaaagacacggtggcggtggatcacgacagagtgatt 82  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  7317794 aacaaagacacggtggcggcggatcacggcagagtgatt 7317832  T

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