View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10423_low_1 (Length: 666)

Name: NF10423_low_1
Description: NF10423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10423_low_1
NF10423_low_1
[»] chr4 (1 HSPs)
chr4 (18-657)||(45820808-45821447)


Alignment Details
Target: chr4 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 18 - 657
Target Start/End: Original strand, 45820808 - 45821447
Alignment:
Q  18 atttaaaatgtttgataaagttgacgatttaactagttaataaatataaaacgacacaacaacgtgacttttaattaatatttaacatttctcaataaat 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45820808 atttaatatgtttgataaagttgacgatttaactagttaataaatataaaacgacacaacaacgtgacttttaattaatatttaacatttctcaataaat 45820907  T
Q  118 atataacttggataatgtttcatagttggtcaattcaaatgattttatcaaatgcttactaaagaaaagatggaagaatcggttgttcattcataacttg 217  Q
     |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45820908 gtataacttggataatgtttcatagttggtcaagtcaaatgattttataaaatgcttactaaagaaaagatggaagaatcggttgttcattcataacttg 45821007  T
Q  218 tttaaaataaagttgcttattcagaggtgtcgttatttgcatgacggttccttaaacacatactttctataaaaagattatttatttacgtgtggtgtca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45821008 tttaaaataaagttgcttattcagaggtgtcgttatttgcatgacggttccttaaacacatactttctataaaaagattatttatttacgtgtggtgtca 45821107  T
Q  318 ttaattggtcgagcatttctaatgccctttagaatgttgcttctttgcatgcatatcaatttagagggtttcactctaataacaaggaatctcaagcttg 417  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45821108 ttaattggtcgagcatttctaatgctctttagaatgttgcttctttgcatgcatatcaatttagagggtttcattctaataacaaggaatctcaagcttg 45821207  T
Q  418 ttttcgacatacaaagtcgacgtgtgcatgagacttttaaagaacgcaataaacgtctatttgatcataaagaaccgatatctcgttagattttagataa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45821208 ttttcgacatacaaagtcgacgtgtgcatgagacttttaaagaacgcaataaacgtctatttgatcataaagaaccgatatctcgttagattttagataa 45821307  T
Q  518 agtgaaagtttagatttcgtggtggattaaatctaagactaaaagtttcaaggatgtatggtttgaatcaatggtagtttaatccactaaattttctttg 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45821308 agtgaaagtttagatttcgtggtggattaaatctaagactaaaagtttcaagtatgtatggtttgaatcaatggtagtttaatccactaaattttctttg 45821407  T
Q  618 ttttgttattcactgaaacaacatttggtgtgttgtttct 657  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  45821408 ttttgttattcactgaaacaacatttggtgtgctgtttct 45821447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University