View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10423_low_2 (Length: 370)
Name: NF10423_low_2
Description: NF10423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10423_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 44798281 - 44798462
Alignment:
| Q |
19 |
aatggtcctatgtgaagaatcataactagaaatgtaatgttttgtttgaatttagaagacacaacaattcaagattaggccaagaaacagattgagtatg |
118 |
Q |
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| T |
44798281 |
aatggtcctatgtgaagaatcctaactaaaaatgtaatgttttgtttgaatttagaagacacaacaattcaagattagaacaagaaacagattgagtatg |
44798380 |
T |
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| Q |
119 |
tgtatcactctctctccttcatctttaccatgaaaacaaattcttgaaaacttcatcactcttaattctacacaatgctcag |
200 |
Q |
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| T |
44798381 |
tgtatcactctctctccttcatctttaccatgaaaacaaattcttgaaaacttcaccactcttaattctacacaatgctcag |
44798462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 44798533 - 44798606
Alignment:
| Q |
271 |
caaaacatcacactctttggtgatgcttcctacacagacactgccattactctcacaaaacaacaacactcttg |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
44798533 |
caaaacatcacactctttggtgatgcttcctacacagacacttccattactctcacaaaacaacaacacacttg |
44798606 |
T |
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