View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10423_low_3 (Length: 230)

Name: NF10423_low_3
Description: NF10423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10423_low_3
NF10423_low_3
[»] chr2 (3 HSPs)
chr2 (43-218)||(4732939-4733115)
chr2 (1-40)||(4736285-4736324)
chr2 (43-143)||(26511105-26511205)
[»] chr6 (4 HSPs)
chr6 (43-209)||(16118418-16118585)
chr6 (74-187)||(20995934-20996048)
chr6 (52-108)||(32054981-32055037)
chr6 (62-153)||(20996801-20996892)
[»] chr7 (4 HSPs)
chr7 (62-187)||(9024955-9025081)
chr7 (75-148)||(22581275-22581348)
chr7 (132-193)||(30334968-30335030)
chr7 (41-104)||(5987697-5987760)
[»] chr8 (2 HSPs)
chr8 (43-200)||(33137403-33137561)
chr8 (53-151)||(33136950-33137048)
[»] chr1 (2 HSPs)
chr1 (45-181)||(12658988-12659123)
chr1 (43-88)||(6396167-6396212)
[»] chr5 (4 HSPs)
chr5 (80-192)||(8589030-8589144)
chr5 (43-153)||(19828081-19828191)
chr5 (155-203)||(19043767-19043815)
chr5 (60-187)||(19828480-19828608)
[»] chr4 (2 HSPs)
chr4 (132-218)||(41982511-41982598)
chr4 (43-106)||(41982597-41982660)
[»] chr3 (2 HSPs)
chr3 (43-139)||(53114193-53114290)
chr3 (80-176)||(27647352-27647449)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 4733115 - 4732939
Alignment:
Q  43 taaaagaacgtgttt-aaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtg 141  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4733115 taaaagaatgtgttttaactgttatttattatcttttgcatgtttaaa-tgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtg 4733017  T
Q  142 ttaaaaaccacta-aaattctctttgttttctacatccacaaacataggttattacaaatatgcggttgctttcatct 218  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  4733016 ttaaaaaccactataaattctctttgttttctacatccacaaacatatgttattataaatatgtggttgctttcatct 4732939  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4736324 - 4736285
Alignment:
Q  1 cttcataaacccctcccatgtagtgatgaaaatcataact 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4736324 cttcataaacccctcccatgtagtgatgaaaatcataact 4736285  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 26511105 - 26511205
Alignment:
Q  43 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 142  Q
    ||||||||| | ||||||  ||||||||||  || ||||||||| |||||||  | |||| |||||||   ||||||||||||||||| |||||||||||    
T  26511105 taaaagaacatatttaactattatttattacattctgcatgtttgaaatgaaacttcatctatgttgaatgtagtctccaaggtcttcatgcaaaagtgt 26511204  T
Q  143 t 143  Q
    |    
T  26511205 t 26511205  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 16118585 - 16118418
Alignment:
Q  43 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 142  Q
    ||||||||  ||||||||| |||||||||| ||||| |||||||||||||||||| ||| |||||||| | || |||| || ||||||||| ||||| ||    
T  16118585 taaaagaatatgtttaaccattatttattaccttttccatgtttaaaatgaagtttcattcatgttgaacataatctcaaaagtcttcgtgtaaaagggt 16118486  T
Q  143 taaaaaccac-taaaattctctttgttttctacatccacaaacataggttattacaaatatgcggttg 209  Q
    |||||| ||| | |||||||||||| ||||||| | || || |||| | ||||||||||||| |||||    
T  16118485 taaaaatcacttcaaattctctttgctttctacgttcataagcatatgctattacaaatatgtggttg 16118418  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 20995934 - 20996048
Alignment:
Q  74 cttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccac-taaaattctctttgttttct 172  Q
    |||||||||||||||||||||||| |||| ||||| | | ||||||||||||||||  |  ||| || |  |||||||| | ||||||  ||||||||||    
T  20995934 cttttgcatgtttaaaatgaagttccatcaatgttcaacatagtctccaaggtctttatttaaatgtttgcaaaaccacttcaaattcaatttgttttct 20996033  T
Q  173 acatccacaaacata 187  Q
    |||||||||| ||||    
T  20996034 acatccacaagcata 20996048  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 32054981 - 32055037
Alignment:
Q  52 gtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgtt 108  Q
    ||||||||| ||||||||||||| ||||||||||| | |||||||| ||| ||||||    
T  32054981 gtgtttaactgttatttattatcatttgcatgtttgagatgaagtttcatacatgtt 32055037  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 20996892 - 20996801
Alignment:
Q  62 gttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccact 153  Q
    ||||||||||| ||||||| ||||| |||| ||||| |||||||||||| | ||| ||| || |   ||||||||||||||| |||| ||||    
T  20996892 gttatttattaccttttgcgtgtttgaaataaagtttcatccatgttgaacgtagcctcgaacgatctcgtgcaaaagtgttgaaaaacact 20996801  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 9025081 - 9024955
Alignment:
Q  62 gttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccactaaaat-tc 160  Q
    |||||||||||  |||||||||||| |||||||||| ||||||| || | | ||||||||||||| ||| |||||||||||| |||||||||  ||| ||    
T  9025081 gttatttattactttttgcatgtttgaaatgaagtttcatccatcttcaacgtagtctccaaggtgttcatgcaaaagtgttgaaaaccacttcaatatc 9024982  T
Q  161 tctttgttttctacatccacaaacata 187  Q
    ||| |||||||||||||||||||||||    
T  9024981 tctctgttttctacatccacaaacata 9024955  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 22581348 - 22581275
Alignment:
Q  75 ttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaa 148  Q
    |||| ||||||||||||||| || |||||||||| | | |||| |||||| ||||| |||||||||||||||||    
T  22581348 ttttccatgtttaaaatgaactttcatccatgttaaccgtagtttccaagatcttcatgcaaaagtgttaaaaa 22581275  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 30335030 - 30334968
Alignment:
Q  132 tgcaaaagtgttaaaaaccacta-aaattctctttgttttctacatccacaaacataggttat 193  Q
    |||||||||||  |||||||||  |||||||||||||||||||||||||||| |||| |||||    
T  30335030 tgcaaaagtgtggaaaaccacttgaaattctctttgttttctacatccacaagcatatgttat 30334968  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 5987760 - 5987697
Alignment:
Q  41 tttaaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatcca 104  Q
    ||||||| || |||||| || ||||||||||| ||||||||||||| ||| |||||| ||||||    
T  5987760 tttaaaaaaatgtgtttgactgttatttattaccttttgcatgtttgaaacgaagtttcatcca 5987697  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 33137561 - 33137403
Alignment:
Q  43 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 142  Q
    ||||| |||||||||||  ||||||||||| |||||| |||||| | |||||||| ||| |||||| ||| ||  ||||||  | ||| |||||||||||    
T  33137561 taaaaaaacgtgtttaattgttatttattaccttttgaatgtttgacatgaagtttcattcatgttcagcgtaacctccaatttattcatgcaaaagtgt 33137462  T
Q  143 taaaaaccac-taaaattctctttgttttctacatccacaaacataggttattacaaat 200  Q
      |||||||| | ||||||||||||||||||| ||||||||| ||| | ||||| ||||    
T  33137461 ggaaaaccacttcaaattctctttgttttctatatccacaaatatatgctattataaat 33137403  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 33136950 - 33137048
Alignment:
Q  53 tgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaacca 151  Q
    |||||||| ||||||||||| ||||||||| ||| |||||||||| |||||||||||| | |||  || |||||| ||  |||| |||||| |||||||    
T  33136950 tgtttaacggttatttattaccttttgcatatttgaaatgaagtttcatccatgttgaacgtagcatcaaaggtcgtcaggcaacagtgttgaaaacca 33137048  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 12659123 - 12658988
Alignment:
Q  45 aaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgtta 144  Q
    |||||| |||||||||  ||||||||||  |||| ||||||| ||||||| || |||||||||| | | ||  ||| ||||||||| ||||||||||||     
T  12659123 aaagaatgtgtttaact-ttatttattacatttt-catgtttgaaatgaaatttcatccatgttcaacgtatcctcgaaggtcttcatgcaaaagtgttg 12659026  T
Q  145 aaaaccac-taaaattctctttgttttctacatccaca 181  Q
    |||||||| | |||||||||||||||||||||||||||    
T  12659025 aaaaccacttcaaattctctttgttttctacatccaca 12658988  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 6396212 - 6396167
Alignment:
Q  43 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaa 88  Q
    |||||||| |||||||||  |||||||||||||||| |||||||||    
T  6396212 taaaagaatgtgtttaactattatttattatctttttcatgtttaa 6396167  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 8589030 - 8589144
Alignment:
Q  80 catgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccac--taaaattctctttgttttctacatc 177  Q
    |||||||||||||||||| |||||||||| |   ||| |||||| |||||| |||||||||||| ||||||||  |||| || | |||||| |||||||     
T  8589030 catgtttaaaatgaagtttcatccatgttcaatgtagcctccaaagtcttcatgcaaaagtgttgaaaaccaccttaaatttttatttgttgtctacatg 8589129  T
Q  178 cacaaacataggtta 192  Q
    |||||||||| ||||    
T  8589130 cacaaacatatgtta 8589144  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 153
Target Start/End: Original strand, 19828081 - 19828191
Alignment:
Q  43 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgt 142  Q
    |||||||| |||||||||  |||||||||||||||||||| ||| |||||||| | |||| ||||||| | ||| || |||| | ||| || ||||||||    
T  19828081 taaaagaatgtgtttaactattatttattatcttttgcatatttgaaatgaagattcatcgatgttgaacctagccttcaagattttcatggaaaagtgt 19828180  T
Q  143 taaaaaccact 153  Q
    | |||| ||||    
T  19828181 tgaaaatcact 19828191  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 19043815 - 19043767
Alignment:
Q  155 aaattctctttgttttctacatccacaaacataggttattacaaatatg 203  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||    
T  19043815 aaattctctttgttttctacacccacaagcatatgttattacaaatatg 19043767  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 187
Target Start/End: Complemental strand, 19828608 - 19828480
Alignment:
Q  60 ccgttatttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccac-taaaat 158  Q
    ||||||| ||| | ||||||||||||| ||| ||| || ||| |||||| | | |||  || ||||||||| | ||||||||| ||||||||| | ||||    
T  19828608 ccgttatctataaccttttgcatgtttgaaacgaaatttcatgcatgttcaacgtagcatcgaaggtcttcattcaaaagtgtgaaaaaccacttcaaat 19828509  T
Q  159 tctctttgttttctacatccacaaacata 187  Q
    | |||||||||||| | ||||||| ||||    
T  19828508 tgtctttgttttcttcgtccacaagcata 19828480  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 41982598 - 41982511
Alignment:
Q  132 tgcaaaagtgttaaaaaccacta-aaattctctttgttttctacatccacaaacataggttattacaaatatgcggttgctttcatct 218  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| | ||| |||| | ||||||||||||| ||||| || |||||    
T  41982598 tgcaaaagtgttaaaaaccacttcaaattctctttgttttctacattcccaagcatatgctattacaaatatgtggttgtttccatct 41982511  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 41982660 - 41982597
Alignment:
Q  43 taaaagaacgtgtttaaccgttatttattatcttttgcatgtttaaaatgaagttacatccatg 106  Q
    ||||||||| |||||||| ||||||||||| ||||| ||||||| |||| ||||| ||| ||||    
T  41982660 taaaagaacatgtttaactgttatttattaccttttacatgtttgaaattaagtttcattcatg 41982597  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 53114290 - 53114193
Alignment:
Q  43 taaaagaacgtgtttaaccgtt-atttattatcttttgcatgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaag 139  Q
    |||||||||||||||||| ||| |||||||| | ||||||||||| ||||||| || |||| ||||||| | ||||||| || |||||| || |||||    
T  53114290 taaaagaacgtgtttaactgtttatttattaccatttgcatgtttgaaatgaattttcatcgatgttgaacgtagtctcaaaagtcttcatgtaaaag 53114193  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 176
Target Start/End: Complemental strand, 27647449 - 27647352
Alignment:
Q  80 catgtttaaaatgaagttacatccatgttgagcttagtctccaaggtcttcgtgcaaaagtgttaaaaaccact-aaaattctctttgttttctacat 176  Q
    ||||||| |||||||||| ||||  | || | | ||| ||| |||||| || |||||||||||| ||||| ||| |||||||| ||||||||||||||    
T  27647449 catgtttgaaatgaagtttcatctgtattcaacgtagcctcaaaggtcgtcatgcaaaagtgttgaaaactacttaaaattctttttgttttctacat 27647352  T

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