View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10424_high_1 (Length: 251)
Name: NF10424_high_1
Description: NF10424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10424_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 38130044 - 38129893
Alignment:
| Q |
1 |
atacctcttgttcctgcagctcaagtagctcctcaagttcaatttcctctagggcttcaattaaattacaggcatgaaatacccatgtacgtattagtga |
100 |
Q |
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| T |
38130044 |
atacctcttgttcctgcagctcaagtagctcctcaagttcaatttcctctagggcttcaattaaattacaggcatgaaatacccatgtacgtattagtga |
38129945 |
T |
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| Q |
101 |
tctttttactgtacgcttgtttgaaaattatcatctaaaacaaatcataacc |
152 |
Q |
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| T |
38129944 |
tctttttactgtatgcttgtttgaaaattattatctaaaacaaatcataacc |
38129893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 38129868 - 38129813
Alignment:
| Q |
178 |
gttcagggaaaactggacctacgtggaattatatgctctattttatgggtacagaa |
233 |
Q |
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| T |
38129868 |
gttcagggaaaactggacctacgtggaattatatgctctattttatgggtacagaa |
38129813 |
T |
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