View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10424_low_1 (Length: 483)
Name: NF10424_low_1
Description: NF10424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10424_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 200 - 473
Target Start/End: Original strand, 34140950 - 34141223
Alignment:
| Q |
200 |
aaccagttggaatgatctcatctctagcaaccctcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
299 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140950 |
aaccagttggaatgatctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
34141049 |
T |
|
| Q |
300 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
399 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34141050 |
caaagggactccatggtttgtgactttaaagaatccccacgctttgcatgcacttccaatctccttgactaagctttcaatagcagatggatttggaact |
34141149 |
T |
|
| Q |
400 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34141150 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
34141223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 200 - 473
Target Start/End: Original strand, 34137287 - 34137560
Alignment:
| Q |
200 |
aaccagttggaatgatctcatctctagcaaccctcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
299 |
Q |
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||||||||||| |||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
34137287 |
aaccagttggattgatttcatctctagcaaccttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagact |
34137386 |
T |
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| Q |
300 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
399 |
Q |
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| ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||| |
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| T |
34137387 |
cgaagggactccatggtttgtgacttggaagaaaccccactctttgcatgcacttccaatttccttcactaagttttcaatatcagatggatttggaact |
34137486 |
T |
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| Q |
400 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
473 |
Q |
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||||||||||||||||||||||| |||||| | ||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
34137487 |
tcattgtggaatattggagagaggtcaattacgggaattcctttggcttcaatgattgagagttttggtctgtg |
34137560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 200 - 473
Target Start/End: Original strand, 34133376 - 34133649
Alignment:
| Q |
200 |
aaccagttggaatgatctcatctctagcaaccctcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagact |
299 |
Q |
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||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||| |
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| T |
34133376 |
aaccagtaggattgacctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagact |
34133475 |
T |
|
| Q |
300 |
caaagggactccatggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaact |
399 |
Q |
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||||||||||||||||||||| |||| |||||| |||||||| |||| |||||||||||||||||| || ||| |||||||| ||||||||||||||||| |
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| T |
34133476 |
caaagggactccatggtttgtgacttgaaagaaaccccactccttgcttgcacttccaatctccttcaccaagttttcaatatcagatggatttggaact |
34133575 |
T |
|
| Q |
400 |
tcattgtggaatattggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
473 |
Q |
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||| ||| | ||||||||||| |||||||| ||||| ||||||||||| |||| |||||||||||||||||| |
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| T |
34133576 |
gcatggtgaagaattggagagaggtcaatttcgggaattcctttggcttcgatgatggagagttttggtctgtg |
34133649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 212 - 473
Target Start/End: Original strand, 34127115 - 34127376
Alignment:
| Q |
212 |
tgatctcatctctagcaaccctcttcttctcctccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagactcaaagggactcc |
311 |
Q |
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||||||||||||| |||||| || | |||||||||||||| |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| | |
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| T |
34127115 |
tgatctcatctctggcaaccttcattttctcctccaaactttgagcaaagaacaatctagcagcttcatcaagtctttgcctaatactcaaagggacctc |
34127214 |
T |
|
| Q |
312 |
atggtttgtaactttaaagaatccccactctttgcatgcacttccaatctccttaactaagctttcaatagcagatggatttggaacttcattgtggaat |
411 |
Q |
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|||||||||||||| |||||| ||||| || ||||||||||||||||||| ||| || ||||| |||||||||||| ||| | ||||||||| ||||||| |
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| T |
34127215 |
atggtttgtaacttgaaagaagccccattccttgcatgcacttccaatcttcttcaccaagctatcaatagcagattgatcttgaacttcatggtggaat |
34127314 |
T |
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| Q |
412 |
attggagagagatcaatttctggaatacctttggcttctatgagggagagttttggtctgtg |
473 |
Q |
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||||| ||||| |||||||| ||||| |||| |||||| |||| ||| |||||||||||||| |
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| T |
34127315 |
attggtgagaggtcaatttcgggaattccttcggcttcaatgatggatagttttggtctgtg |
34127376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 34140342 - 34140418
Alignment:
| Q |
124 |
taatttatatggttaaaacaattcaaatatattcttaattatgtttgatgaattaatcgttcaaattattataaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140342 |
taatttatatggttaaaacaattcaaatatattcttaattatgtttgatgaattaatcgttcaaattattataaaaa |
34140418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 40333079 - 40333025
Alignment:
| Q |
64 |
caaattgtatgttcgtgtggctctcgtgtgctgactttgtcttgctgtatagcag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40333079 |
caaattgtatgttcgtgtggctctcgtgtgctgactttgtcgtgctgtatagcag |
40333025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 48583945 - 48583989
Alignment:
| Q |
78 |
gtgtggctctcgtgtgctgactttgtcttgctgtatagcagcgct |
122 |
Q |
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| T |
48583945 |
gtgtggctttcgtgtgttgattttgtcgtgctgtatagcagcgct |
48583989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 13066764 - 13066886
Alignment:
| Q |
1 |
ttgttttttaatatatactataaacaaaagcatcaataaactgaaagaaaactaataatacagcaaattgtatgttcgtgtggctctcgtgtgctgactt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13066764 |
ttgttttttaatatatactataaacaaaagcatcaataaactgaaagaaa-ctaataatacaacaaattgtatgttcgtgtggctctcgtgtgctgactt |
13066862 |
T |
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| Q |
101 |
tgtcttgctgtatagcagcgctct |
124 |
Q |
| |
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|||| ||||||||||||| ||||| |
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| T |
13066863 |
tgtcatgctgtatagcagtgctct |
13066886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 13557696 - 13557730
Alignment:
| Q |
8 |
ttaatatatactataaacaaaagcatcaataaact |
42 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |
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| T |
13557696 |
ttaatatatactatatacaaaagcatcaataaact |
13557730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41313032 - 41312972
Alignment:
| Q |
1 |
ttgttttttaatata-tactataaacaaaagcatcaataaactgaaagaaaactaataata |
60 |
Q |
| |
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||||||||||||||| ||||||| |||||||||||||||| | ||||||| ||| ||||| |
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| T |
41313032 |
ttgttttttaatatactactatatacaaaagcatcaataaccataaagaaatctattaata |
41312972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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