View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10424_low_11 (Length: 241)
Name: NF10424_low_11
Description: NF10424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10424_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 29526578 - 29526709
Alignment:
| Q |
35 |
gccacctccggttggggattcagagaggaacgcataacaaagagcagacaaccgtagattatcgcaacaaaaataaatatccagttgattgttaacagtt |
134 |
Q |
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| T |
29526578 |
gccacctccggttgggaattcagagaggaacgtataacaaagagcagacaaccgtagattatggcaacaaaaatcaatatccagttgatggtcaacagtt |
29526677 |
T |
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| Q |
135 |
gaattgtaaagcaacataaaaaataagagaac |
166 |
Q |
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| T |
29526678 |
gaattgtaaagcaacctaagaaataagagaac |
29526709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 29528610 - 29528772
Alignment:
| Q |
61 |
ggaacgcataacaaagagcagacaaccgtagattatcgcaacaaaaataaatatccagttgattgttaacagttgaattgtaaagcaacataaaaaataa |
160 |
Q |
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| T |
29528610 |
ggaatgcataacaaagagaagaaaacagtagattatggcaacaaaaatcaatatccagttgattgttaacagttgaactgtaaagcaacataagaaatat |
29528709 |
T |
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| Q |
161 |
gagaacataccaaactcagacttaaacataaacagcatgtgcaggcttactgacaacaaagca |
223 |
Q |
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| T |
29528710 |
gagaatatacccatctcagacttcaacttaaacagtttgtgcaagcttaatgacaccaaagca |
29528772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 29474974 - 29475054
Alignment:
| Q |
98 |
gcaacaaaaataaatatccagttgattgttaacagttgaattgtaaagcaacataaaaaataagagaacataccaaactca |
178 |
Q |
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| T |
29474974 |
gcaacaaaaataaacatccagttgatggttaacagttgaactgtaaagcaacctaagaaataagagaatacaccaatctca |
29475054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 28184022 - 28183899
Alignment:
| Q |
44 |
ggttggggattcagagaggaacgcataacaaagagcagacaaccgtagattatcgcaacaaaaataaatatccagttgattgttaacagttgaattgtaa |
143 |
Q |
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||||||||||||| || ||| | | || |||||||||| ||||| ||||||| |||| ||| | || | ||||||||| ||||||||||||||||||| |
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| T |
28184022 |
ggttggggattcatagtagaatgaagaagaaagagcagaaaaccgaagattatggcaaaaaagttcaacacccagttgatggttaacagttgaattgtaa |
28183923 |
T |
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| Q |
144 |
agcaacataaaaaataagagaaca |
167 |
Q |
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|||||| || |||||||||||||| |
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| T |
28183922 |
agcaacctacaaaataagagaaca |
28183899 |
T |
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