View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10424_low_2 (Length: 481)
Name: NF10424_low_2
Description: NF10424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10424_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 27405214 - 27405404
Alignment:
| Q |
5 |
atggacatcatcaactcacaaaggtacgcttacgaggagagaagtcattgtgttttttcatagacaaacacatatgctagactatactaatcatttgaag |
104 |
Q |
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| T |
27405214 |
atggacatcagcaactcacataggtacagtgatgaggagagaagtctttgtgttttctcat---caaacacatatgctagactacagtgatcatttgaag |
27405310 |
T |
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| Q |
105 |
tnnnnnnnnnnnnnnnnnngtactctaactacaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttcca |
198 |
Q |
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| T |
27405311 |
taaaaacagaattaaaaaagtactctaactacaacatacaactcattcgtgcaatggtgacgaaattttatgtcgtgtgttttagctttttcca |
27405404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 5589952 - 5589763
Alignment:
| Q |
9 |
acatcatcaactcacaaaggtacgcttacgaggagagaagtcattgtgttttttcatagacaaacacatatgctagactatactaatcatttgaagtnnn |
108 |
Q |
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| T |
5589952 |
acatcagcaactcacaaagatacagtgatgaggagagaagtgtttgtgttttctcatagacaaacacatatgctagactacagtgatcgtttgaagtaaa |
5589853 |
T |
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| Q |
109 |
nnnnnnnnnnnnnnngtactctaactacaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttcca |
198 |
Q |
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| T |
5589852 |
agcataattaaaaaagtattctaactacaacttacaactcattcgtgcaatggtgaagaaattttatgtcgtgcgttttagctttttcca |
5589763 |
T |
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Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 38919745 - 38919818
Alignment:
| Q |
124 |
gtactctaactacaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttcc |
197 |
Q |
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| T |
38919745 |
gtactataactactacatacaattcattcgtgcaatggtgacgaaattttatgtcgtgcattttatctttttcc |
38919818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 313
Target Start/End: Original strand, 18808758 - 18808843
Alignment:
| Q |
229 |
tgctttttaagcacttaaagtggtaacattataggaaagtt-atgcatttattgcattaggtattgaaatctttaattattttaaa |
313 |
Q |
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| T |
18808758 |
tgctctttaagcacctaaaatggtaagattttatgaaagtttatgcatttattgcattagaaattgaagtctttactttttttaaa |
18808843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 51291195 - 51291115
Alignment:
| Q |
234 |
tttaagcacttaaagtggtaacattataggaaagtta-tgcatttattgcattaggtattgaaatctttaattattttaaa |
313 |
Q |
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||||||||| |||| |||||| ||| || ||||||| ||||||||||||||| | |||||| ||||||||||||||||| |
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| T |
51291195 |
tttaagcacctaaaatggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtctttaattattttaaa |
51291115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 229011 - 228975
Alignment:
| Q |
52 |
ttgtgttttttcatagacaaacacatatgctagacta |
88 |
Q |
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| T |
229011 |
ttgtgttattttatagacaaacacatatgctagacta |
228975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 17441578 - 17441515
Alignment:
| Q |
135 |
acaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttccat |
199 |
Q |
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| T |
17441578 |
acaacatataactcattcgtgcaatagtgac-gaattttttgtcgtgcactttagctttttccat |
17441515 |
T |
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