View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10424_low_6 (Length: 387)
Name: NF10424_low_6
Description: NF10424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10424_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 10283834 - 10284196
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10283834 |
ctcaggagccactttaggattcaaatttgaaccaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctcctgcataatgtctcagc |
10283933 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10283934 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccagttgcttaatcctg |
10284033 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaac |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10284034 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaac |
10284133 |
T |
|
| Q |
301 |
accttctttgatatcagtaacaagttcttcccaaacttgttcaaatgttctgaaagcattcac |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10284134 |
accttctttgatatcagtaacaagttcttcccaaatttgttcaaatgttctgaaagcattcac |
10284196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 10243010 - 10243368
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||| ||||||||||| ||| ||||||| ||||||| | |
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| T |
10243010 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagagccatactcagaagtcaacaaaggaacctctcctgcatagtgtctcaac |
10243109 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
10243110 |
tttttcacataaggttccattgcaccagtcatgatcccttgaacatacttaacattaggaaaaagctctggtatcagtccataccaattgctcaatccta |
10243209 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaac |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10243210 |
tgcatttcttgtggatcaagttagctagttcaggatttggtttcagcagttttgacattgcagttctaatggatggatgtgtgattctactgctaagaac |
10243309 |
T |
|
| Q |
301 |
accttctttgatatcagtaacaagttcttcccaaacttgttcaaatgttctgaaagcat |
359 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
10243310 |
accttctttgatgtcagtaataagttcttcccaaacttgttcaaaggttctgaaagcat |
10243368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 10272592 - 10272954
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||||| | ||||||||| ||| ||||||| ||||||| | |
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|
| T |
10272592 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagagccatactcagaagtcaccaaaggaacctctcctgcatagtgtctcaac |
10272691 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||| |||||| |
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| T |
10272692 |
tttttcaagtaatgttccattgaacctgtcatgatccctagaagatacttagcattagggaaaagctccggtatcaatccataccaattgctcaatccta |
10272791 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
10272792 |
tgcatttcttgtggatcaagttagctagttcaggatttggtgtcagcagtttagacatagcagttctaatgaatggatgtgtgattctactgctaagaac |
10272891 |
T |
|
| Q |
301 |
accttctttgatatcagtaacaagttcttcccaaacttgttcaaatgttctgaaagcattcac |
363 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
10272892 |
accttctctgatatcagtaacaagttcctcccaaacttgttcaaatgttctgaaagcattcac |
10272954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 10264895 - 10265253
Alignment:
| Q |
1 |
ctcaggagccactttaggattcaaatttaaactaatccaaccttcagaagcaccataatcagaagttaacaaaggaacttctactgcataatgtctcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||||||| ||||||||||| ||| ||||||| ||||||| | |
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|
| T |
10264895 |
ctcaggagccactttaggattcacatttgaagcaatccaaccttcagaagcaccatattcagaagtcaacaaaggaacctctcctgcatagtgtctcaac |
10264994 |
T |
|
| Q |
101 |
tttttcatataaggttccattgcacctgtcatgatccctagaacatacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctg |
200 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||| |||||| |
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|
| T |
10264995 |
tttttcaagtaatgttccattgaacctgtcatgattcctagaacatacttaacattaggaaaaagttctggtatcaatccataccaatcgctcaatccta |
10265094 |
T |
|
| Q |
201 |
agcatttcttgtggatcaagttagctagttcaggatttggtttcagcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | ||| |||||||||| |
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| T |
10265095 |
tgcatttcttgtggatcaagttagctagttcaggatttggtttcagcagtttagacatagcagttctaatggatggatgtgttaccctattgctaagaac |
10265194 |
T |
|
| Q |
301 |
accttctttgatatcagtaacaagttcttcccaaacttgttcaaatgttctgaaagcat |
359 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
10265195 |
accttctctgatatcaaaaacaagttcctcccaaacttgttcaaatgttctgaaagcat |
10265253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 306
Target Start/End: Original strand, 13979838 - 13979996
Alignment:
| Q |
146 |
tacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctgagcatttcttgtggatcaagttagctagttcaggatttggtttca |
245 |
Q |
| |
|
||||| ||||| ||||| | |||||||| ||| ||||||||||| | || ||| ||||| |||||||| | || ||||| ||| ||||||||||| | |
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|
| T |
13979838 |
tacttcgcattaggaaacaactctggtaacaaaccataccaattattcaaccctagacattttttgtggattatgtcagctaattctggatttggtttga |
13979937 |
T |
|
| Q |
246 |
gcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaacaccttc |
306 |
Q |
| |
|
||||||| ||||||| ||| ||| ||||||| ||||| |||||| |||||||| ||||| |
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|
| T |
13979938 |
gcaatttagacatag--attcgaatcgatggatctgtgactctactactaagaactccttc |
13979996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 146 - 359
Target Start/End: Complemental strand, 48367773 - 48367560
Alignment:
| Q |
146 |
tacttagcatttggaaaaagctctggtatcaatccataccaattgcttaatcctgagcatttcttgtggatcaagttagctagttcaggatttggtttca |
245 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| |||||||| |||||||||||| ||| | |||||||| | ||| |||| ||| ||||||||||| | |
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|
| T |
48367773 |
tactttgcattcggaaaaagctccggtatcaaaccataccagttgcttaatcctatacatcttttgtggattatgttcgctaattctggatttggtttga |
48367674 |
T |
|
| Q |
246 |
gcaattttgacatagcagttctaatggatggatgtgtgattctactgctaagaacaccttctttgatatcagtaacaagttcttcccaaacttgttcaaa |
345 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||| |||| ||| || ||||||||||||||| | |||||| || ||| |||||||||||||||||||| |
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|
| T |
48367673 |
gcaatttagacatagcagttcgaatggagggaaccgtgactctgctactaagaacaccttctcttatatcattacaaagctcttcccaaacttgttcaaa |
48367574 |
T |
|
| Q |
346 |
tgttctgaaagcat |
359 |
Q |
| |
|
| |||||| |||| |
|
|
| T |
48367573 |
ggatctgaaggcat |
48367560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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