View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10424_low_9 (Length: 246)
Name: NF10424_low_9
Description: NF10424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10424_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 34140053 - 34140270
Alignment:
| Q |
19 |
agggcatggaggatagtagttgaatcttataaagctagtttgatccttgtagaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140053 |
agggcatggaggatagtagttgaatcttataaagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagc |
34140152 |
T |
|
| Q |
119 |
tccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttgacatcaattttaaaaacaacccattagttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34140153 |
tccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttgacatcaattttaaaaacaacccattagttta |
34140252 |
T |
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| Q |
219 |
aaagttaatctacctttg |
236 |
Q |
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|||||||||||||||||| |
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| T |
34140253 |
aaagttaatctacctttg |
34140270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 34131204 - 34131398
Alignment:
| Q |
19 |
agggcatggaggatagtagttgaatcttataaagctagtttgatccttgtagaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagc |
118 |
Q |
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||||||||||||||||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
34131204 |
agggcatggaggatagtggttgaatctaataaagctagtttgatacttgaagaattcttcaaacctctttgcttcaagtcctaagcttagagctattagc |
34131303 |
T |
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| Q |
119 |
tccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttgacatcaattttaaaaacaacccatta |
213 |
Q |
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| T |
34131304 |
tccagcaacctatatgccagcttttccacctcttgaatatactcttcaagtatagccctgctcatgtagacatcaattttaaacacaacccatta |
34131398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 34136895 - 34137079
Alignment:
| Q |
19 |
agggcatggaggatagtagttgaatcttataaagctagtttgatccttgtagaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagc |
118 |
Q |
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||||||||||||||||| ||||||||| ||||||||||| ||||| ||| |||| |||||||||||||||||||||| ||||||||| |||||||| ||| |
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| T |
34136895 |
agggcatggaggatagtggttgaatctaataaagctagtgtgatctttgaagaactcttcaaacctctttgcttcaactcctaagctcaaagctattagc |
34136994 |
T |
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| Q |
119 |
tccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttgacatcaattttaaaaa |
203 |
Q |
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|| | ||||| |||| ||||||||||||||| |||||||||||| |||| | || || ||||| |||| ||||||||||| |
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| T |
34136995 |
tcaagcaacttgtaagccaacttttccatctcttcattatactcttcaactatagccctgcttatgttcacataaattttaaaaa |
34137079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 34126066 - 34126244
Alignment:
| Q |
23 |
catggaggatagtagttgaatcttataaagctagtttgatccttgtagaattcttcaaacctctttgcttcaagtcctaagcttaaagctataagctcca |
122 |
Q |
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||||||||||||| |||| ||| | | ||||||| ||||||| ||||||||||||||||| |||||||||| |||||||| |||||||| | ||||| |
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| T |
34126066 |
catggaggatagtgattgattctaaacacgctagttgtatccttgaagaattcttcaaacctcattgcttcaagccctaagctcaaagctattaactcca |
34126165 |
T |
|
| Q |
123 |
ataacttacgggccagcttttccatctcttcgatatactcttcaattataactctactcatgttgacatcaattttaaa |
201 |
Q |
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|||||| ||||| ||||||||||| | |||||||||||||||||| || ||||||||||||| ||||||||| |
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| T |
34126166 |
gcaacttagaggccaaattttccatctccttaatatactcttcaattatattcctgctcatgttgacattaattttaaa |
34126244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 34142699 - 34142860
Alignment:
| Q |
19 |
agggcatggaggatagtagttgaatcttataaagctagtttgatccttgt---agaattcttcaaacctctttgcttcaagtcctaagcttaaagctata |
115 |
Q |
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||||||||||||||| | ||| | ||| | ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| | |||||| |
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| T |
34142699 |
agggcatggaggataatggttaagtctaagaaagctagtttgatctttgatgaagaattcttcaaacctctttgcttcaactcctaagctaagagctatg |
34142798 |
T |
|
| Q |
116 |
agctccaataacttacgggccagcttttccatctcttcgatatactcttcaattataactct |
177 |
Q |
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||||| | ||| || ||| |||||||||||||||| |||||||||| || |||||||| |
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| T |
34142799 |
agctctagcaacgtaaaggctagcttttccatctctttaatatactctttaagaataactct |
34142860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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